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Model-based ensembles: Lessons learned from retrospective analysis of COVID-19 infection forecasts across 10 countries

Mathematical models of different types and data intensities are highly used by researchers, epidemiologists, and national authorities to explore the inherently unpredictable progression of COVID-19, including the effects of different non-pharmaceutical interventions. Regardless of model complexity,...

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Autores principales: Drews, Martin, Kumar, Pavan, Singh, Ram Kumar, De La Sen, Manuel, Singh, Sati Shankar, Pandey, Ajai Kumar, Kumar, Manoj, Rani, Meenu, Srivastava, Prashant Kumar
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Authors. Published by Elsevier B.V. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8479318/
https://www.ncbi.nlm.nih.gov/pubmed/34592277
http://dx.doi.org/10.1016/j.scitotenv.2021.150639
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author Drews, Martin
Kumar, Pavan
Singh, Ram Kumar
De La Sen, Manuel
Singh, Sati Shankar
Pandey, Ajai Kumar
Kumar, Manoj
Rani, Meenu
Srivastava, Prashant Kumar
author_facet Drews, Martin
Kumar, Pavan
Singh, Ram Kumar
De La Sen, Manuel
Singh, Sati Shankar
Pandey, Ajai Kumar
Kumar, Manoj
Rani, Meenu
Srivastava, Prashant Kumar
author_sort Drews, Martin
collection PubMed
description Mathematical models of different types and data intensities are highly used by researchers, epidemiologists, and national authorities to explore the inherently unpredictable progression of COVID-19, including the effects of different non-pharmaceutical interventions. Regardless of model complexity, forecasts of future COVID-19 infections, deaths and hospitalization are associated with large uncertainties, and critically depend on the quality of the training data, and in particular how well the recorded national or regional numbers of infections, deaths and recoveries reflect the the actual situation. In turn, this depends on, e.g., local test and abatement strategies, treatment capacities and available technologies. Other influencing factors including temperature and humidity, which are suggested by several authors to affect the spread of COVID-19 in some countries, are generally only considered by the most complex models and further serve to inflate the uncertainty. Here we use comparative and retrospective analyses to illuminate the aggregated effect of these systematic biases on ensemble-based model forecasts. We compare the actual progression of active infections across ten of the most affected countries in the world until late November 2020 with “re-forecasts” produced by two of the most commonly used model types: (i) a compartment-type, susceptible–infected–removed (SIR) model; and (ii) a statistical (Holt-Winters) time series model. We specifically examine the sensitivity of the model parameters, estimated systematically from different subsets of the data and thereby different time windows, to illustrate the associated implications for short- to medium-term forecasting and for probabilistic projections based on (single) model ensembles as inspired by, e.g., weather forecasting and climate research. Our findings portray considerable variations in forecasting skill in between the ten countries and demonstrate that individual model predictions are highly sensitive to parameter assumptions. Significant skill is generally only confirmed for short-term forecasts (up to a few weeks) with some variation across locations and periods.
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spelling pubmed-84793182021-09-29 Model-based ensembles: Lessons learned from retrospective analysis of COVID-19 infection forecasts across 10 countries Drews, Martin Kumar, Pavan Singh, Ram Kumar De La Sen, Manuel Singh, Sati Shankar Pandey, Ajai Kumar Kumar, Manoj Rani, Meenu Srivastava, Prashant Kumar Sci Total Environ Article Mathematical models of different types and data intensities are highly used by researchers, epidemiologists, and national authorities to explore the inherently unpredictable progression of COVID-19, including the effects of different non-pharmaceutical interventions. Regardless of model complexity, forecasts of future COVID-19 infections, deaths and hospitalization are associated with large uncertainties, and critically depend on the quality of the training data, and in particular how well the recorded national or regional numbers of infections, deaths and recoveries reflect the the actual situation. In turn, this depends on, e.g., local test and abatement strategies, treatment capacities and available technologies. Other influencing factors including temperature and humidity, which are suggested by several authors to affect the spread of COVID-19 in some countries, are generally only considered by the most complex models and further serve to inflate the uncertainty. Here we use comparative and retrospective analyses to illuminate the aggregated effect of these systematic biases on ensemble-based model forecasts. We compare the actual progression of active infections across ten of the most affected countries in the world until late November 2020 with “re-forecasts” produced by two of the most commonly used model types: (i) a compartment-type, susceptible–infected–removed (SIR) model; and (ii) a statistical (Holt-Winters) time series model. We specifically examine the sensitivity of the model parameters, estimated systematically from different subsets of the data and thereby different time windows, to illustrate the associated implications for short- to medium-term forecasting and for probabilistic projections based on (single) model ensembles as inspired by, e.g., weather forecasting and climate research. Our findings portray considerable variations in forecasting skill in between the ten countries and demonstrate that individual model predictions are highly sensitive to parameter assumptions. Significant skill is generally only confirmed for short-term forecasts (up to a few weeks) with some variation across locations and periods. The Authors. Published by Elsevier B.V. 2022-02-01 2021-09-27 /pmc/articles/PMC8479318/ /pubmed/34592277 http://dx.doi.org/10.1016/j.scitotenv.2021.150639 Text en © 2021 The Authors Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Drews, Martin
Kumar, Pavan
Singh, Ram Kumar
De La Sen, Manuel
Singh, Sati Shankar
Pandey, Ajai Kumar
Kumar, Manoj
Rani, Meenu
Srivastava, Prashant Kumar
Model-based ensembles: Lessons learned from retrospective analysis of COVID-19 infection forecasts across 10 countries
title Model-based ensembles: Lessons learned from retrospective analysis of COVID-19 infection forecasts across 10 countries
title_full Model-based ensembles: Lessons learned from retrospective analysis of COVID-19 infection forecasts across 10 countries
title_fullStr Model-based ensembles: Lessons learned from retrospective analysis of COVID-19 infection forecasts across 10 countries
title_full_unstemmed Model-based ensembles: Lessons learned from retrospective analysis of COVID-19 infection forecasts across 10 countries
title_short Model-based ensembles: Lessons learned from retrospective analysis of COVID-19 infection forecasts across 10 countries
title_sort model-based ensembles: lessons learned from retrospective analysis of covid-19 infection forecasts across 10 countries
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8479318/
https://www.ncbi.nlm.nih.gov/pubmed/34592277
http://dx.doi.org/10.1016/j.scitotenv.2021.150639
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