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Dataset of single nucleotide polymorphisms and comprehensive proteomic analysis of Streptococcus equi subsp. equi ATCC 39506

Streptococcus equi subspecies equi (S. equi) is an opportunistic pathogen and a major causative agent of equine strangles, a contagious respiratory infection in horses and other equines. In this study, we provide the dataset associated with our research publication “Streptococcus equi-derived extrac...

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Autores principales: Lee, Hayoung, Yun, Sung Ho, Hyon, Ju-yong, Lee, Sang-Yeop, Yi, Yoon-Sun, Choi, Chi-Won, Jun, Sangmi, Park, Edmond Changkyun, Kim, Seung Il
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8479396/
https://www.ncbi.nlm.nih.gov/pubmed/34621931
http://dx.doi.org/10.1016/j.dib.2021.107402
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author Lee, Hayoung
Yun, Sung Ho
Hyon, Ju-yong
Lee, Sang-Yeop
Yi, Yoon-Sun
Choi, Chi-Won
Jun, Sangmi
Park, Edmond Changkyun
Kim, Seung Il
author_facet Lee, Hayoung
Yun, Sung Ho
Hyon, Ju-yong
Lee, Sang-Yeop
Yi, Yoon-Sun
Choi, Chi-Won
Jun, Sangmi
Park, Edmond Changkyun
Kim, Seung Il
author_sort Lee, Hayoung
collection PubMed
description Streptococcus equi subspecies equi (S. equi) is an opportunistic pathogen and a major causative agent of equine strangles, a contagious respiratory infection in horses and other equines. In this study, we provide the dataset associated with our research publication “Streptococcus equi-derived extracellular vesicles as a vaccine candidate against Streptococcus equi infections” [1]. We describe the genomic differences between S. equi 4047 and S. equi ATCC 39506 and outline the comprehensive proteome information of various fractions, including the whole cell lysate, membrane proteome, secretory proteome, and extracellular vesicle proteome. In addition, we included a dataset of highly immunoreactive proteins identified through immunoprecipitation. The specifications table provides a detailed summary of the gene annotation and quantitative information obtained for each proteome. The proteomics data were analyzed using shotgun proteomics with LTQ Velos and Q Exactive mass spectrometry in the data-dependent acquisition mode. We have deposited the acquired data, including the mass spectrometry raw files and exported MASCOT search results, in the PRIDE public repository under the accession numbers PXD025152 and PXD025527.
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spelling pubmed-84793962021-10-06 Dataset of single nucleotide polymorphisms and comprehensive proteomic analysis of Streptococcus equi subsp. equi ATCC 39506 Lee, Hayoung Yun, Sung Ho Hyon, Ju-yong Lee, Sang-Yeop Yi, Yoon-Sun Choi, Chi-Won Jun, Sangmi Park, Edmond Changkyun Kim, Seung Il Data Brief Data Article Streptococcus equi subspecies equi (S. equi) is an opportunistic pathogen and a major causative agent of equine strangles, a contagious respiratory infection in horses and other equines. In this study, we provide the dataset associated with our research publication “Streptococcus equi-derived extracellular vesicles as a vaccine candidate against Streptococcus equi infections” [1]. We describe the genomic differences between S. equi 4047 and S. equi ATCC 39506 and outline the comprehensive proteome information of various fractions, including the whole cell lysate, membrane proteome, secretory proteome, and extracellular vesicle proteome. In addition, we included a dataset of highly immunoreactive proteins identified through immunoprecipitation. The specifications table provides a detailed summary of the gene annotation and quantitative information obtained for each proteome. The proteomics data were analyzed using shotgun proteomics with LTQ Velos and Q Exactive mass spectrometry in the data-dependent acquisition mode. We have deposited the acquired data, including the mass spectrometry raw files and exported MASCOT search results, in the PRIDE public repository under the accession numbers PXD025152 and PXD025527. Elsevier 2021-09-23 /pmc/articles/PMC8479396/ /pubmed/34621931 http://dx.doi.org/10.1016/j.dib.2021.107402 Text en © 2021 The Authors. Published by Elsevier Inc. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Data Article
Lee, Hayoung
Yun, Sung Ho
Hyon, Ju-yong
Lee, Sang-Yeop
Yi, Yoon-Sun
Choi, Chi-Won
Jun, Sangmi
Park, Edmond Changkyun
Kim, Seung Il
Dataset of single nucleotide polymorphisms and comprehensive proteomic analysis of Streptococcus equi subsp. equi ATCC 39506
title Dataset of single nucleotide polymorphisms and comprehensive proteomic analysis of Streptococcus equi subsp. equi ATCC 39506
title_full Dataset of single nucleotide polymorphisms and comprehensive proteomic analysis of Streptococcus equi subsp. equi ATCC 39506
title_fullStr Dataset of single nucleotide polymorphisms and comprehensive proteomic analysis of Streptococcus equi subsp. equi ATCC 39506
title_full_unstemmed Dataset of single nucleotide polymorphisms and comprehensive proteomic analysis of Streptococcus equi subsp. equi ATCC 39506
title_short Dataset of single nucleotide polymorphisms and comprehensive proteomic analysis of Streptococcus equi subsp. equi ATCC 39506
title_sort dataset of single nucleotide polymorphisms and comprehensive proteomic analysis of streptococcus equi subsp. equi atcc 39506
topic Data Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8479396/
https://www.ncbi.nlm.nih.gov/pubmed/34621931
http://dx.doi.org/10.1016/j.dib.2021.107402
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