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Materials Precursor Score: Modeling Chemists’ Intuition for the Synthetic Accessibility of Porous Organic Cage Precursors

[Image: see text] Computation is increasingly being used to try to accelerate the discovery of new materials. One specific example of this is porous molecular materials, specifically porous organic cages, where the porosity of the materials predominantly comes from the internal cavities of the molec...

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Autores principales: Bennett, Steven, Szczypiński, Filip T., Turcani, Lukas, Briggs, Michael E., Greenaway, Rebecca L., Jelfs, Kim E.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2021
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8479809/
https://www.ncbi.nlm.nih.gov/pubmed/34388347
http://dx.doi.org/10.1021/acs.jcim.1c00375
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author Bennett, Steven
Szczypiński, Filip T.
Turcani, Lukas
Briggs, Michael E.
Greenaway, Rebecca L.
Jelfs, Kim E.
author_facet Bennett, Steven
Szczypiński, Filip T.
Turcani, Lukas
Briggs, Michael E.
Greenaway, Rebecca L.
Jelfs, Kim E.
author_sort Bennett, Steven
collection PubMed
description [Image: see text] Computation is increasingly being used to try to accelerate the discovery of new materials. One specific example of this is porous molecular materials, specifically porous organic cages, where the porosity of the materials predominantly comes from the internal cavities of the molecules themselves. The computational discovery of novel structures with useful properties is currently hindered by the difficulty in transitioning from a computational prediction to synthetic realization. Attempts at experimental validation are often time-consuming, expensive, and frequently, the key bottleneck of material discovery. In this work, we developed a computational screening workflow for porous molecules that includes consideration of the synthetic difficulty of material precursors, aimed at easing the transition between computational prediction and experimental realization. We trained a machine learning model by first collecting data on 12,553 molecules categorized either as “easy-to-synthesize” or “difficult-to-synthesize” by expert chemists with years of experience in organic synthesis. We used an approach to address the class imbalance present in our data set, producing a binary classifier able to categorize easy-to-synthesize molecules with few false positives. We then used our model during computational screening for porous organic molecules to bias toward precursors whose easier synthesis requirements would make them promising candidates for experimental realization and material development. We found that even by limiting precursors to those that are easier-to-synthesize, we are still able to identify cages with favorable, and even some rare, properties.
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spelling pubmed-84798092021-09-29 Materials Precursor Score: Modeling Chemists’ Intuition for the Synthetic Accessibility of Porous Organic Cage Precursors Bennett, Steven Szczypiński, Filip T. Turcani, Lukas Briggs, Michael E. Greenaway, Rebecca L. Jelfs, Kim E. J Chem Inf Model [Image: see text] Computation is increasingly being used to try to accelerate the discovery of new materials. One specific example of this is porous molecular materials, specifically porous organic cages, where the porosity of the materials predominantly comes from the internal cavities of the molecules themselves. The computational discovery of novel structures with useful properties is currently hindered by the difficulty in transitioning from a computational prediction to synthetic realization. Attempts at experimental validation are often time-consuming, expensive, and frequently, the key bottleneck of material discovery. In this work, we developed a computational screening workflow for porous molecules that includes consideration of the synthetic difficulty of material precursors, aimed at easing the transition between computational prediction and experimental realization. We trained a machine learning model by first collecting data on 12,553 molecules categorized either as “easy-to-synthesize” or “difficult-to-synthesize” by expert chemists with years of experience in organic synthesis. We used an approach to address the class imbalance present in our data set, producing a binary classifier able to categorize easy-to-synthesize molecules with few false positives. We then used our model during computational screening for porous organic molecules to bias toward precursors whose easier synthesis requirements would make them promising candidates for experimental realization and material development. We found that even by limiting precursors to those that are easier-to-synthesize, we are still able to identify cages with favorable, and even some rare, properties. American Chemical Society 2021-08-13 2021-09-27 /pmc/articles/PMC8479809/ /pubmed/34388347 http://dx.doi.org/10.1021/acs.jcim.1c00375 Text en © 2021 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by-nc-nd/4.0/Permits non-commercial access and re-use, provided that author attribution and integrity are maintained; but does not permit creation of adaptations or other derivative works (https://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Bennett, Steven
Szczypiński, Filip T.
Turcani, Lukas
Briggs, Michael E.
Greenaway, Rebecca L.
Jelfs, Kim E.
Materials Precursor Score: Modeling Chemists’ Intuition for the Synthetic Accessibility of Porous Organic Cage Precursors
title Materials Precursor Score: Modeling Chemists’ Intuition for the Synthetic Accessibility of Porous Organic Cage Precursors
title_full Materials Precursor Score: Modeling Chemists’ Intuition for the Synthetic Accessibility of Porous Organic Cage Precursors
title_fullStr Materials Precursor Score: Modeling Chemists’ Intuition for the Synthetic Accessibility of Porous Organic Cage Precursors
title_full_unstemmed Materials Precursor Score: Modeling Chemists’ Intuition for the Synthetic Accessibility of Porous Organic Cage Precursors
title_short Materials Precursor Score: Modeling Chemists’ Intuition for the Synthetic Accessibility of Porous Organic Cage Precursors
title_sort materials precursor score: modeling chemists’ intuition for the synthetic accessibility of porous organic cage precursors
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8479809/
https://www.ncbi.nlm.nih.gov/pubmed/34388347
http://dx.doi.org/10.1021/acs.jcim.1c00375
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