Cargando…
Solvation Free Energies for Aqueous and Nonaqueous Solutions Computed Using PM7 Atomic Charges
[Image: see text] We describe a simple and accurate method, ESE-PM7, for calculating solvation free energies ΔG(solv)(°) in aqueous and nonaqueous solutions. The method is based on a noniterative COSMO algorithm. Molecular geometries and atomic charges calculated using the semiempirical method PM7 a...
Autores principales: | , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2021
|
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8479861/ https://www.ncbi.nlm.nih.gov/pubmed/34525302 http://dx.doi.org/10.1021/acs.jcim.1c00885 |
_version_ | 1784576349405446144 |
---|---|
author | Vyboishchikov, Sergei F. Voityuk, Alexander A. |
author_facet | Vyboishchikov, Sergei F. Voityuk, Alexander A. |
author_sort | Vyboishchikov, Sergei F. |
collection | PubMed |
description | [Image: see text] We describe a simple and accurate method, ESE-PM7, for calculating solvation free energies ΔG(solv)(°) in aqueous and nonaqueous solutions. The method is based on a noniterative COSMO algorithm. Molecular geometries and atomic charges calculated using the semiempirical method PM7 are used to calculate ΔG(solv)(°). The method has been tested on 92 different solvents and 988 solutes. The mean absolute errors (MAEs) in ΔG(solv)(°) in aqueous solutions estimated by the ESE-PM7 approach are found to be 1.62 kcal/mol for 389 neutral solutes and 3.06 kcal/mol for 139 ions. The MAEs for neutral molecules in organic solvents are 0.97, 0.74, and 0.51 kcal/mol in polar protic, polar aprotic, and nonpolar solvents, respectively. The developed method can be employed to quickly screen ΔG(solv)(°) values of extended molecular systems including pharmaceutical and biological molecules. |
format | Online Article Text |
id | pubmed-8479861 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-84798612021-09-30 Solvation Free Energies for Aqueous and Nonaqueous Solutions Computed Using PM7 Atomic Charges Vyboishchikov, Sergei F. Voityuk, Alexander A. J Chem Inf Model [Image: see text] We describe a simple and accurate method, ESE-PM7, for calculating solvation free energies ΔG(solv)(°) in aqueous and nonaqueous solutions. The method is based on a noniterative COSMO algorithm. Molecular geometries and atomic charges calculated using the semiempirical method PM7 are used to calculate ΔG(solv)(°). The method has been tested on 92 different solvents and 988 solutes. The mean absolute errors (MAEs) in ΔG(solv)(°) in aqueous solutions estimated by the ESE-PM7 approach are found to be 1.62 kcal/mol for 389 neutral solutes and 3.06 kcal/mol for 139 ions. The MAEs for neutral molecules in organic solvents are 0.97, 0.74, and 0.51 kcal/mol in polar protic, polar aprotic, and nonpolar solvents, respectively. The developed method can be employed to quickly screen ΔG(solv)(°) values of extended molecular systems including pharmaceutical and biological molecules. American Chemical Society 2021-09-15 2021-09-27 /pmc/articles/PMC8479861/ /pubmed/34525302 http://dx.doi.org/10.1021/acs.jcim.1c00885 Text en © 2021 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Vyboishchikov, Sergei F. Voityuk, Alexander A. Solvation Free Energies for Aqueous and Nonaqueous Solutions Computed Using PM7 Atomic Charges |
title | Solvation Free Energies for Aqueous and Nonaqueous
Solutions Computed Using PM7 Atomic Charges |
title_full | Solvation Free Energies for Aqueous and Nonaqueous
Solutions Computed Using PM7 Atomic Charges |
title_fullStr | Solvation Free Energies for Aqueous and Nonaqueous
Solutions Computed Using PM7 Atomic Charges |
title_full_unstemmed | Solvation Free Energies for Aqueous and Nonaqueous
Solutions Computed Using PM7 Atomic Charges |
title_short | Solvation Free Energies for Aqueous and Nonaqueous
Solutions Computed Using PM7 Atomic Charges |
title_sort | solvation free energies for aqueous and nonaqueous
solutions computed using pm7 atomic charges |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8479861/ https://www.ncbi.nlm.nih.gov/pubmed/34525302 http://dx.doi.org/10.1021/acs.jcim.1c00885 |
work_keys_str_mv | AT vyboishchikovsergeif solvationfreeenergiesforaqueousandnonaqueoussolutionscomputedusingpm7atomiccharges AT voityukalexandera solvationfreeenergiesforaqueousandnonaqueoussolutionscomputedusingpm7atomiccharges |