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Forecasting COVID-19 Chile’ second outbreak by a generalized SIR model with constant time delays and a fitted positivity rate

The COVID-19 disease has forced countries to make a considerable collaborative effort between scientists and governments to provide indicators to suitable follow-up the pandemic’s consequences. Mathematical modeling plays a crucial role in quantifying indicators describing diverse aspects of the pan...

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Autores principales: Cumsille, Patricio, Rojas-Díaz, Óscar, de Espanés, Pablo Moisset, Verdugo-Hernández, Paula
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Association for Mathematics and Computers in Simulation (IMACS). Published by Elsevier B.V. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8480140/
https://www.ncbi.nlm.nih.gov/pubmed/34608351
http://dx.doi.org/10.1016/j.matcom.2021.09.016
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author Cumsille, Patricio
Rojas-Díaz, Óscar
de Espanés, Pablo Moisset
Verdugo-Hernández, Paula
author_facet Cumsille, Patricio
Rojas-Díaz, Óscar
de Espanés, Pablo Moisset
Verdugo-Hernández, Paula
author_sort Cumsille, Patricio
collection PubMed
description The COVID-19 disease has forced countries to make a considerable collaborative effort between scientists and governments to provide indicators to suitable follow-up the pandemic’s consequences. Mathematical modeling plays a crucial role in quantifying indicators describing diverse aspects of the pandemic. Consequently, this work aims to develop a clear, efficient, and reproducible methodology for parameter optimization, whose implementation is illustrated using data from three representative regions from Chile and a suitable generalized SIR model together with a fitted positivity rate. Our results reproduce the general trend of the infected’s curve, distinguishing the reported and real cases. Finally, our methodology is robust, and it allows us to forecast a second outbreak of COVID-19 and the infection fatality rate of COVID-19 qualitatively according to the reported dead cases.
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spelling pubmed-84801402021-09-30 Forecasting COVID-19 Chile’ second outbreak by a generalized SIR model with constant time delays and a fitted positivity rate Cumsille, Patricio Rojas-Díaz, Óscar de Espanés, Pablo Moisset Verdugo-Hernández, Paula Math Comput Simul Original Articles The COVID-19 disease has forced countries to make a considerable collaborative effort between scientists and governments to provide indicators to suitable follow-up the pandemic’s consequences. Mathematical modeling plays a crucial role in quantifying indicators describing diverse aspects of the pandemic. Consequently, this work aims to develop a clear, efficient, and reproducible methodology for parameter optimization, whose implementation is illustrated using data from three representative regions from Chile and a suitable generalized SIR model together with a fitted positivity rate. Our results reproduce the general trend of the infected’s curve, distinguishing the reported and real cases. Finally, our methodology is robust, and it allows us to forecast a second outbreak of COVID-19 and the infection fatality rate of COVID-19 qualitatively according to the reported dead cases. International Association for Mathematics and Computers in Simulation (IMACS). Published by Elsevier B.V. 2022-03 2021-09-29 /pmc/articles/PMC8480140/ /pubmed/34608351 http://dx.doi.org/10.1016/j.matcom.2021.09.016 Text en © 2021 International Association for Mathematics and Computers in Simulation (IMACS). Published by Elsevier B.V. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Original Articles
Cumsille, Patricio
Rojas-Díaz, Óscar
de Espanés, Pablo Moisset
Verdugo-Hernández, Paula
Forecasting COVID-19 Chile’ second outbreak by a generalized SIR model with constant time delays and a fitted positivity rate
title Forecasting COVID-19 Chile’ second outbreak by a generalized SIR model with constant time delays and a fitted positivity rate
title_full Forecasting COVID-19 Chile’ second outbreak by a generalized SIR model with constant time delays and a fitted positivity rate
title_fullStr Forecasting COVID-19 Chile’ second outbreak by a generalized SIR model with constant time delays and a fitted positivity rate
title_full_unstemmed Forecasting COVID-19 Chile’ second outbreak by a generalized SIR model with constant time delays and a fitted positivity rate
title_short Forecasting COVID-19 Chile’ second outbreak by a generalized SIR model with constant time delays and a fitted positivity rate
title_sort forecasting covid-19 chile’ second outbreak by a generalized sir model with constant time delays and a fitted positivity rate
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8480140/
https://www.ncbi.nlm.nih.gov/pubmed/34608351
http://dx.doi.org/10.1016/j.matcom.2021.09.016
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