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Multi-Omics Analysis Identifying Key Biomarkers in Ovarian Cancer
Ovarian cancer is one of the most common malignant tumors. Here, we aimed to study the expression and function of the CREB1 gene in ovarian cancer via the bioinformatic analyses of multiple databases. Previously, the prognosis of ovarian cancer was based on single-factor or single-gene studies. In t...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
SAGE Publications
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8480361/ https://www.ncbi.nlm.nih.gov/pubmed/33297760 http://dx.doi.org/10.1177/1073274820976671 |
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author | Li, Ju-Yueh Li, Chia-Jung Lin, Li-Te Tsui, Kuan-Hao |
author_facet | Li, Ju-Yueh Li, Chia-Jung Lin, Li-Te Tsui, Kuan-Hao |
author_sort | Li, Ju-Yueh |
collection | PubMed |
description | Ovarian cancer is one of the most common malignant tumors. Here, we aimed to study the expression and function of the CREB1 gene in ovarian cancer via the bioinformatic analyses of multiple databases. Previously, the prognosis of ovarian cancer was based on single-factor or single-gene studies. In this study, different bioinformatics tools (such as TCGA, GEPIA, UALCAN, MEXPRESS, and Metascape) have been used to assess the expression and prognostic value of the CREB1 gene. We used the Reactome and cBioPortal databases to identify and analyze CREB1 mutations, copy number changes, expression changes, and protein–protein interactions. By analyzing data on the CREB1 differential expression in ovarian cancer tissues and normal tissues from 12 studies collected from the “Human Protein Atlas” database, we found a significantly higher expression of CREB1 in normal ovarian tissues. Using this database, we collected information on the expression of 25 different CREB-related proteins, including TP53, AKT1, and AKT3. The enrichment of these factors depended on tumor metabolism, invasion, proliferation, and survival. Individualized tumors based on gene therapy related to prognosis have become a new possibility. In summary, we established a new type of prognostic gene profile for ovarian cancer using the tools of bioinformatics. |
format | Online Article Text |
id | pubmed-8480361 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | SAGE Publications |
record_format | MEDLINE/PubMed |
spelling | pubmed-84803612021-09-30 Multi-Omics Analysis Identifying Key Biomarkers in Ovarian Cancer Li, Ju-Yueh Li, Chia-Jung Lin, Li-Te Tsui, Kuan-Hao Cancer Control Molecular Basis of Carcinogenesis Ovarian cancer is one of the most common malignant tumors. Here, we aimed to study the expression and function of the CREB1 gene in ovarian cancer via the bioinformatic analyses of multiple databases. Previously, the prognosis of ovarian cancer was based on single-factor or single-gene studies. In this study, different bioinformatics tools (such as TCGA, GEPIA, UALCAN, MEXPRESS, and Metascape) have been used to assess the expression and prognostic value of the CREB1 gene. We used the Reactome and cBioPortal databases to identify and analyze CREB1 mutations, copy number changes, expression changes, and protein–protein interactions. By analyzing data on the CREB1 differential expression in ovarian cancer tissues and normal tissues from 12 studies collected from the “Human Protein Atlas” database, we found a significantly higher expression of CREB1 in normal ovarian tissues. Using this database, we collected information on the expression of 25 different CREB-related proteins, including TP53, AKT1, and AKT3. The enrichment of these factors depended on tumor metabolism, invasion, proliferation, and survival. Individualized tumors based on gene therapy related to prognosis have become a new possibility. In summary, we established a new type of prognostic gene profile for ovarian cancer using the tools of bioinformatics. SAGE Publications 2020-12-09 /pmc/articles/PMC8480361/ /pubmed/33297760 http://dx.doi.org/10.1177/1073274820976671 Text en © The Author(s) 2020 https://creativecommons.org/licenses/by-nc/4.0/This article is distributed under the terms of the Creative Commons Attribution-NonCommercial 4.0 License (https://creativecommons.org/licenses/by-nc/4.0/) which permits non-commercial use, reproduction and distribution of the work without further permission provided the original work is attributed as specified on the SAGE and Open Access pages (https://us.sagepub.com/en-us/nam/open-access-at-sage). |
spellingShingle | Molecular Basis of Carcinogenesis Li, Ju-Yueh Li, Chia-Jung Lin, Li-Te Tsui, Kuan-Hao Multi-Omics Analysis Identifying Key Biomarkers in Ovarian Cancer |
title | Multi-Omics Analysis Identifying Key Biomarkers in Ovarian Cancer |
title_full | Multi-Omics Analysis Identifying Key Biomarkers in Ovarian Cancer |
title_fullStr | Multi-Omics Analysis Identifying Key Biomarkers in Ovarian Cancer |
title_full_unstemmed | Multi-Omics Analysis Identifying Key Biomarkers in Ovarian Cancer |
title_short | Multi-Omics Analysis Identifying Key Biomarkers in Ovarian Cancer |
title_sort | multi-omics analysis identifying key biomarkers in ovarian cancer |
topic | Molecular Basis of Carcinogenesis |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8480361/ https://www.ncbi.nlm.nih.gov/pubmed/33297760 http://dx.doi.org/10.1177/1073274820976671 |
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