Cargando…

Minimizing Pervasive Artifacts in 4D Covariance Maps for Protein Side Chain NMR Assignments

[Image: see text] Nuclear magnetic resonance (NMR) is a mainstay of biophysical studies that provides atomic level readouts to formulate molecular mechanisms. Side chains are particularly important to derive mechanisms involving proteins as they carry functional groups, but NMR studies of side chain...

Descripción completa

Detalles Bibliográficos
Autores principales:	Kancherla, Aswani K., Marincin, Kenneth A., Mishra, Subrata H., Frueh, Dominique P.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	American Chemical Society 2021
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8480538/ https://www.ncbi.nlm.nih.gov/pubmed/34510900 http://dx.doi.org/10.1021/acs.jpca.1c05507

Ejemplares similares

Global protein dynamics as communication sensors in peptide synthetase domains
por: Mishra, Subrata H., et al.
Publicado: (2022)

Facilitated Assignment of Large Protein NMR Signals with Covariance Sequential Spectra Using Spectral Derivatives
por: Harden, Bradley J., et al.
Publicado: (2014)

High and fast: NMR protein–proton side-chain assignments at 160 kHz and 1.2 GHz
por: Callon, Morgane, et al.
Publicado: (2023)

Using delayed decoupling to attenuate residual signals in editing filters
por: Marincin, Kenneth A., et al.
Publicado: (2021)

Backbone and side chain NMR assignments for the intrinsically disordered cytoplasmic domain of human neuroligin-3
por: Wood, Kathleen, et al.
Publicado: (2011)

Backbone and partial side chain assignment of the microtubule binding domain of the MAP1B light chain
por: Orbán-Németh, Zsuzsanna, et al.
Publicado: (2013)

Backbone and side chain NMR assignment of the heme-nitric oxide/oxygen binding (H-NOX) domain from Nostoc punctiforme
por: Chasapi, Styliani A., et al.
Publicado: (2022)

Automated side-chain model building and sequence assignment by template matching
por: Terwilliger, Thomas C.
Publicado: (2002)

Assignment of aromatic side-chain spins and characterization of their distance restraints at fast MAS
por: Ahlawat, Sahil, et al.
Publicado: (2022)

Contact replacement for NMR resonance assignment
por: Xiong, Fei, et al.
Publicado: (2008)

Graphical analysis of NMR structural quality and interactive contact map of NOE assignments in ARIA
por: Bardiaux, Benjamin, et al.
Publicado: (2008)

Automated NMR resonance assignments and structure determination using a minimal set of 4D spectra
por: Evangelidis, Thomas, et al.
Publicado: (2018)

Backbone and side chain resonance assignment of the intrinsically disordered human DBNDD1 protein
por: Wiedemann, Christoph, et al.
Publicado: (2022)

A Tool Set to Map Allosteric Networks through the NMR Chemical Shift Covariance Analysis
por: Boulton, Stephen, et al.
Publicado: (2014)

Solid state NMR assignments of a human λ-III immunoglobulin light chain amyloid fibril
por: Pradhan, Tejaswini, et al.
Publicado: (2020)

Recognition of RNA by the S9.6 antibody creates pervasive artifacts when imaging RNA:DNA hybrids
por: Smolka, John A., et al.
Publicado: (2021)

CcpNmr AnalysisAssign: a flexible platform for integrated NMR analysis
por: Skinner, Simon P., et al.
Publicado: (2016)

Backbone and side-chain resonance assignments of the NISTmAb-scFv and antigen-binding study
por: Ghasriani, Houman, et al.
Publicado: (2022)

ncIDP-assign: a SPARKY extension for the effective NMR assignment of intrinsically disordered proteins
por: Tamiola, Kamil, et al.
Publicado: (2011)

Automated Resonance Assignment of Proteins: 6 DAPSY-NMR
por: Fiorito, Francesco, et al.
Publicado: (2006)

Backbone Assignment of the MALT1 Paracaspase by Solution NMR
por: Unnerståle, Sofia, et al.
Publicado: (2016)

NMR resonance assignment and dynamics of profilin from Heimdallarchaeota
por: Haq, Syed Razaul, et al.
Publicado: (2020)

Nano-Mole Scale Side-Chain Signal Assignment by (1)H-Detected Protein Solid-State NMR by Ultra-Fast Magic-Angle Spinning and Stereo-Array Isotope Labeling
por: Wang, Songlin, et al.
Publicado: (2015)

NMR (1)H,(13)C, (15)N backbone and (13)C side chain resonance assignment of the G12C mutant of human K-Ras bound to GDP
por: Sharma, Alok K., et al.
Publicado: (2018)

Robust, Integrated Computational Control of NMR Experiments to Achieve Optimal Assignment by ADAPT-NMR
por: Bahrami, Arash, et al.
Publicado: (2012)

Toward a Computational NMR Procedure for Modeling Dipeptide Side-Chain Conformation
por: San Fabián, Jesús, et al.
Publicado: (2021)

Single-sided NMR
por: Casanova, Federico, et al.
Publicado: (2011)

Assessment of gene-covariate interactions by incorporating covariates into association mapping
por: Chiu, Yen-Feng, et al.
Publicado: (2009)

Haplotype assignment of longitudinal viral deep sequencing data using covariation of variant frequencies
por: Venturini, Cristina, et al.
Publicado: (2022)

GANA—a genetic algorithm for NMR backbone resonance assignment
por: Lin, Hsin-Nan, et al.
Publicado: (2005)

NMR assignment of the SARS-CoV protein nsp1
por: Almeida, M. S., et al.
Publicado: (2006)

The Involvement of Amino Acid Side Chains in Shielding the Nickel Coordination Site: An NMR Study
por: Medici, Serenella, et al.
Publicado: (2013)

Characterising side chains in large proteins by protonless (13)C-detected NMR spectroscopy
por: Pritchard, Ruth B., et al.
Publicado: (2019)

Protein Side-Chain–DNA Contacts Probed by Fast Magic-Angle Spinning NMR
por: Lacabanne, Denis, et al.
Publicado: (2020)

Mapping side chain interactions at protein helix termini
por: Newell, Nicholas E
Publicado: (2015)

Detecting hierarchical organization of pervasive communities by modular decomposition of Markov chain
por: Okamoto, Hiroshi, et al.
Publicado: (2022)

Assigning Backbone NMR Resonances for Full Length Tau Isoforms: Efficient Compromise between Manual Assignments and Reduced Dimensionality
por: Harbison, Nicholas W., et al.
Publicado: (2012)

Determining rotational dynamics of the guanidino group of arginine side chains in proteins by carbon-detected NMR
por: Gerecht, Karola, et al.
Publicado: (2017)

Unravelling Main- and Side-Chain Motions in Polymers with NMR Spectroscopy and Relaxometry: The Case of Polyvinyl Butyral
por: Calucci, Lucia, et al.
Publicado: (2021)

2D-HSQC-NMR-Based Screening of Feruloylated Side-Chains of Cereal Grain Arabinoxylans
por: Schendel, Rachel R., et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_oni0ttk7npibcl1rfklmvkva0s