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Correlation between LRP1B Mutations and Tumor Mutation Burden in Gastric Cancer

BACKGROUND: It has been shown that low-density lipoprotein receptor-related protein 1B (LRP1B) mutations correlate with tumor mutation burden (TMB) and prognosis in patients with melanoma and non-small-cell lung cancer, while the relationship between LRP1B mutations and TMB in gastric cancer needs f...

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Autores principales: Hu, Sizhe, Zhao, Xiaokang, Qian, Feng, Jin, Cancan, Hou, Kaishun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8481040/
https://www.ncbi.nlm.nih.gov/pubmed/34603481
http://dx.doi.org/10.1155/2021/1522250
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author Hu, Sizhe
Zhao, Xiaokang
Qian, Feng
Jin, Cancan
Hou, Kaishun
author_facet Hu, Sizhe
Zhao, Xiaokang
Qian, Feng
Jin, Cancan
Hou, Kaishun
author_sort Hu, Sizhe
collection PubMed
description BACKGROUND: It has been shown that low-density lipoprotein receptor-related protein 1B (LRP1B) mutations correlate with tumor mutation burden (TMB) and prognosis in patients with melanoma and non-small-cell lung cancer, while the relationship between LRP1B mutations and TMB in gastric cancer needs further study. This study is aimed at exploring the relationship between LRP1B mutations and TMB in gastric cancer. METHODS: Mutation frequency profiles of the genes in patients with gastric cancer in TCGA-STAD dataset were analyzed by bioinformatics analysis. The relationship among LRP1B mutations, TMB, and patient clinical features in gastric cancer was investigated by the chi-square test. The TMB prediction capacity based on LRP1B mutation status was evaluated by ROC curves. RESULTS: LRP1B is one of the top 10 genes with high gene mutation frequency in gastric cancer. The mutation status of LRP1B in gastric cancer patients was significantly correlated with age and TP53 and MUC16 mutation status. The result of ROC curve analysis revealed that the mutation status of LRP1B could be considered as an indicator of the degree of TMB in patients with gastric cancer. CONCLUSION: This study presented the relationship between TMB and LRP1B mutations in gastric cancer, providing a novel perspective for gastric cancer prognosis and therapy.
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spelling pubmed-84810402021-09-30 Correlation between LRP1B Mutations and Tumor Mutation Burden in Gastric Cancer Hu, Sizhe Zhao, Xiaokang Qian, Feng Jin, Cancan Hou, Kaishun Comput Math Methods Med Research Article BACKGROUND: It has been shown that low-density lipoprotein receptor-related protein 1B (LRP1B) mutations correlate with tumor mutation burden (TMB) and prognosis in patients with melanoma and non-small-cell lung cancer, while the relationship between LRP1B mutations and TMB in gastric cancer needs further study. This study is aimed at exploring the relationship between LRP1B mutations and TMB in gastric cancer. METHODS: Mutation frequency profiles of the genes in patients with gastric cancer in TCGA-STAD dataset were analyzed by bioinformatics analysis. The relationship among LRP1B mutations, TMB, and patient clinical features in gastric cancer was investigated by the chi-square test. The TMB prediction capacity based on LRP1B mutation status was evaluated by ROC curves. RESULTS: LRP1B is one of the top 10 genes with high gene mutation frequency in gastric cancer. The mutation status of LRP1B in gastric cancer patients was significantly correlated with age and TP53 and MUC16 mutation status. The result of ROC curve analysis revealed that the mutation status of LRP1B could be considered as an indicator of the degree of TMB in patients with gastric cancer. CONCLUSION: This study presented the relationship between TMB and LRP1B mutations in gastric cancer, providing a novel perspective for gastric cancer prognosis and therapy. Hindawi 2021-09-21 /pmc/articles/PMC8481040/ /pubmed/34603481 http://dx.doi.org/10.1155/2021/1522250 Text en Copyright © 2021 Sizhe Hu et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Hu, Sizhe
Zhao, Xiaokang
Qian, Feng
Jin, Cancan
Hou, Kaishun
Correlation between LRP1B Mutations and Tumor Mutation Burden in Gastric Cancer
title Correlation between LRP1B Mutations and Tumor Mutation Burden in Gastric Cancer
title_full Correlation between LRP1B Mutations and Tumor Mutation Burden in Gastric Cancer
title_fullStr Correlation between LRP1B Mutations and Tumor Mutation Burden in Gastric Cancer
title_full_unstemmed Correlation between LRP1B Mutations and Tumor Mutation Burden in Gastric Cancer
title_short Correlation between LRP1B Mutations and Tumor Mutation Burden in Gastric Cancer
title_sort correlation between lrp1b mutations and tumor mutation burden in gastric cancer
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8481040/
https://www.ncbi.nlm.nih.gov/pubmed/34603481
http://dx.doi.org/10.1155/2021/1522250
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