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Whole exome sequencing in 17 consanguineous Iranian pedigrees expands the mutational spectrum of inherited retinal dystrophies
Inherited retinal dystrophies (IRDs) constitute one of the most heterogeneous groups of Mendelian human disorders. Using autozygome-guided next-generation sequencing methods in 17 consanguineous pedigrees of Iranian descent with isolated or syndromic IRD, we identified 17 distinct genomic variants i...
Autores principales: | , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8481312/ https://www.ncbi.nlm.nih.gov/pubmed/34588515 http://dx.doi.org/10.1038/s41598-021-98677-3 |
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author | Rehman, Atta Ur Sepahi, Neda Bedoni, Nicola Ravesh, Zeinab Salmaninejad, Arash Cancellieri, Francesca Peter, Virginie G. Quinodoz, Mathieu Mojarrad, Majid Pasdar, Alireza Asad, Ali Ghanbari Ghalamkari, Saman Piran, Mehran Piran, Mehrdad Superti-Furga, Andrea Rivolta, Carlo |
author_facet | Rehman, Atta Ur Sepahi, Neda Bedoni, Nicola Ravesh, Zeinab Salmaninejad, Arash Cancellieri, Francesca Peter, Virginie G. Quinodoz, Mathieu Mojarrad, Majid Pasdar, Alireza Asad, Ali Ghanbari Ghalamkari, Saman Piran, Mehran Piran, Mehrdad Superti-Furga, Andrea Rivolta, Carlo |
author_sort | Rehman, Atta Ur |
collection | PubMed |
description | Inherited retinal dystrophies (IRDs) constitute one of the most heterogeneous groups of Mendelian human disorders. Using autozygome-guided next-generation sequencing methods in 17 consanguineous pedigrees of Iranian descent with isolated or syndromic IRD, we identified 17 distinct genomic variants in 11 previously-reported disease genes. Consistent with a recessive inheritance pattern, as suggested by pedigrees, variants discovered in our study were exclusively bi-allelic and mostly in a homozygous state (in 15 families out of 17, or 88%). Out of the 17 variants identified, 5 (29%) were never reported before. Interestingly, two mutations (GUCY2D:c.564dup, p.Ala189ArgfsTer130 and TULP1:c.1199G > A, p.Arg400Gln) were also identified in four separate pedigrees (two pedigrees each). In addition to expanding the mutational spectrum of IRDs, our findings confirm that the traditional practice of endogamy in the Iranian population is a prime cause for the appearance of IRDs. |
format | Online Article Text |
id | pubmed-8481312 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-84813122021-10-01 Whole exome sequencing in 17 consanguineous Iranian pedigrees expands the mutational spectrum of inherited retinal dystrophies Rehman, Atta Ur Sepahi, Neda Bedoni, Nicola Ravesh, Zeinab Salmaninejad, Arash Cancellieri, Francesca Peter, Virginie G. Quinodoz, Mathieu Mojarrad, Majid Pasdar, Alireza Asad, Ali Ghanbari Ghalamkari, Saman Piran, Mehran Piran, Mehrdad Superti-Furga, Andrea Rivolta, Carlo Sci Rep Article Inherited retinal dystrophies (IRDs) constitute one of the most heterogeneous groups of Mendelian human disorders. Using autozygome-guided next-generation sequencing methods in 17 consanguineous pedigrees of Iranian descent with isolated or syndromic IRD, we identified 17 distinct genomic variants in 11 previously-reported disease genes. Consistent with a recessive inheritance pattern, as suggested by pedigrees, variants discovered in our study were exclusively bi-allelic and mostly in a homozygous state (in 15 families out of 17, or 88%). Out of the 17 variants identified, 5 (29%) were never reported before. Interestingly, two mutations (GUCY2D:c.564dup, p.Ala189ArgfsTer130 and TULP1:c.1199G > A, p.Arg400Gln) were also identified in four separate pedigrees (two pedigrees each). In addition to expanding the mutational spectrum of IRDs, our findings confirm that the traditional practice of endogamy in the Iranian population is a prime cause for the appearance of IRDs. Nature Publishing Group UK 2021-09-29 /pmc/articles/PMC8481312/ /pubmed/34588515 http://dx.doi.org/10.1038/s41598-021-98677-3 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Rehman, Atta Ur Sepahi, Neda Bedoni, Nicola Ravesh, Zeinab Salmaninejad, Arash Cancellieri, Francesca Peter, Virginie G. Quinodoz, Mathieu Mojarrad, Majid Pasdar, Alireza Asad, Ali Ghanbari Ghalamkari, Saman Piran, Mehran Piran, Mehrdad Superti-Furga, Andrea Rivolta, Carlo Whole exome sequencing in 17 consanguineous Iranian pedigrees expands the mutational spectrum of inherited retinal dystrophies |
title | Whole exome sequencing in 17 consanguineous Iranian pedigrees expands the mutational spectrum of inherited retinal dystrophies |
title_full | Whole exome sequencing in 17 consanguineous Iranian pedigrees expands the mutational spectrum of inherited retinal dystrophies |
title_fullStr | Whole exome sequencing in 17 consanguineous Iranian pedigrees expands the mutational spectrum of inherited retinal dystrophies |
title_full_unstemmed | Whole exome sequencing in 17 consanguineous Iranian pedigrees expands the mutational spectrum of inherited retinal dystrophies |
title_short | Whole exome sequencing in 17 consanguineous Iranian pedigrees expands the mutational spectrum of inherited retinal dystrophies |
title_sort | whole exome sequencing in 17 consanguineous iranian pedigrees expands the mutational spectrum of inherited retinal dystrophies |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8481312/ https://www.ncbi.nlm.nih.gov/pubmed/34588515 http://dx.doi.org/10.1038/s41598-021-98677-3 |
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