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Whole exome sequencing in 17 consanguineous Iranian pedigrees expands the mutational spectrum of inherited retinal dystrophies

Inherited retinal dystrophies (IRDs) constitute one of the most heterogeneous groups of Mendelian human disorders. Using autozygome-guided next-generation sequencing methods in 17 consanguineous pedigrees of Iranian descent with isolated or syndromic IRD, we identified 17 distinct genomic variants i...

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Autores principales: Rehman, Atta Ur, Sepahi, Neda, Bedoni, Nicola, Ravesh, Zeinab, Salmaninejad, Arash, Cancellieri, Francesca, Peter, Virginie G., Quinodoz, Mathieu, Mojarrad, Majid, Pasdar, Alireza, Asad, Ali Ghanbari, Ghalamkari, Saman, Piran, Mehran, Piran, Mehrdad, Superti-Furga, Andrea, Rivolta, Carlo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8481312/
https://www.ncbi.nlm.nih.gov/pubmed/34588515
http://dx.doi.org/10.1038/s41598-021-98677-3
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author Rehman, Atta Ur
Sepahi, Neda
Bedoni, Nicola
Ravesh, Zeinab
Salmaninejad, Arash
Cancellieri, Francesca
Peter, Virginie G.
Quinodoz, Mathieu
Mojarrad, Majid
Pasdar, Alireza
Asad, Ali Ghanbari
Ghalamkari, Saman
Piran, Mehran
Piran, Mehrdad
Superti-Furga, Andrea
Rivolta, Carlo
author_facet Rehman, Atta Ur
Sepahi, Neda
Bedoni, Nicola
Ravesh, Zeinab
Salmaninejad, Arash
Cancellieri, Francesca
Peter, Virginie G.
Quinodoz, Mathieu
Mojarrad, Majid
Pasdar, Alireza
Asad, Ali Ghanbari
Ghalamkari, Saman
Piran, Mehran
Piran, Mehrdad
Superti-Furga, Andrea
Rivolta, Carlo
author_sort Rehman, Atta Ur
collection PubMed
description Inherited retinal dystrophies (IRDs) constitute one of the most heterogeneous groups of Mendelian human disorders. Using autozygome-guided next-generation sequencing methods in 17 consanguineous pedigrees of Iranian descent with isolated or syndromic IRD, we identified 17 distinct genomic variants in 11 previously-reported disease genes. Consistent with a recessive inheritance pattern, as suggested by pedigrees, variants discovered in our study were exclusively bi-allelic and mostly in a homozygous state (in 15 families out of 17, or 88%). Out of the 17 variants identified, 5 (29%) were never reported before. Interestingly, two mutations (GUCY2D:c.564dup, p.Ala189ArgfsTer130 and TULP1:c.1199G > A, p.Arg400Gln) were also identified in four separate pedigrees (two pedigrees each). In addition to expanding the mutational spectrum of IRDs, our findings confirm that the traditional practice of endogamy in the Iranian population is a prime cause for the appearance of IRDs.
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spelling pubmed-84813122021-10-01 Whole exome sequencing in 17 consanguineous Iranian pedigrees expands the mutational spectrum of inherited retinal dystrophies Rehman, Atta Ur Sepahi, Neda Bedoni, Nicola Ravesh, Zeinab Salmaninejad, Arash Cancellieri, Francesca Peter, Virginie G. Quinodoz, Mathieu Mojarrad, Majid Pasdar, Alireza Asad, Ali Ghanbari Ghalamkari, Saman Piran, Mehran Piran, Mehrdad Superti-Furga, Andrea Rivolta, Carlo Sci Rep Article Inherited retinal dystrophies (IRDs) constitute one of the most heterogeneous groups of Mendelian human disorders. Using autozygome-guided next-generation sequencing methods in 17 consanguineous pedigrees of Iranian descent with isolated or syndromic IRD, we identified 17 distinct genomic variants in 11 previously-reported disease genes. Consistent with a recessive inheritance pattern, as suggested by pedigrees, variants discovered in our study were exclusively bi-allelic and mostly in a homozygous state (in 15 families out of 17, or 88%). Out of the 17 variants identified, 5 (29%) were never reported before. Interestingly, two mutations (GUCY2D:c.564dup, p.Ala189ArgfsTer130 and TULP1:c.1199G > A, p.Arg400Gln) were also identified in four separate pedigrees (two pedigrees each). In addition to expanding the mutational spectrum of IRDs, our findings confirm that the traditional practice of endogamy in the Iranian population is a prime cause for the appearance of IRDs. Nature Publishing Group UK 2021-09-29 /pmc/articles/PMC8481312/ /pubmed/34588515 http://dx.doi.org/10.1038/s41598-021-98677-3 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Rehman, Atta Ur
Sepahi, Neda
Bedoni, Nicola
Ravesh, Zeinab
Salmaninejad, Arash
Cancellieri, Francesca
Peter, Virginie G.
Quinodoz, Mathieu
Mojarrad, Majid
Pasdar, Alireza
Asad, Ali Ghanbari
Ghalamkari, Saman
Piran, Mehran
Piran, Mehrdad
Superti-Furga, Andrea
Rivolta, Carlo
Whole exome sequencing in 17 consanguineous Iranian pedigrees expands the mutational spectrum of inherited retinal dystrophies
title Whole exome sequencing in 17 consanguineous Iranian pedigrees expands the mutational spectrum of inherited retinal dystrophies
title_full Whole exome sequencing in 17 consanguineous Iranian pedigrees expands the mutational spectrum of inherited retinal dystrophies
title_fullStr Whole exome sequencing in 17 consanguineous Iranian pedigrees expands the mutational spectrum of inherited retinal dystrophies
title_full_unstemmed Whole exome sequencing in 17 consanguineous Iranian pedigrees expands the mutational spectrum of inherited retinal dystrophies
title_short Whole exome sequencing in 17 consanguineous Iranian pedigrees expands the mutational spectrum of inherited retinal dystrophies
title_sort whole exome sequencing in 17 consanguineous iranian pedigrees expands the mutational spectrum of inherited retinal dystrophies
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8481312/
https://www.ncbi.nlm.nih.gov/pubmed/34588515
http://dx.doi.org/10.1038/s41598-021-98677-3
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