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Molecular principles of recruitment and dynamics of guest proteins in liquid droplets

Despite the continuous discovery of host and guest proteins in membraneless organelles, complex host–guest interactions hinder the understanding of the molecular grammar governing liquid–liquid phase separation. In this study, we characterized the localization and dynamic properties of guest protein...

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Autores principales: Kamagata, Kiyoto, Iwaki, Nanako, Hazra, Milan Kumar, Kanbayashi, Saori, Banerjee, Trishit, Chiba, Rika, Sakomoto, Seiji, Gaudon, Virginie, Castaing, Bertrand, Takahashi, Hiroto, Kimura, Michiko, Oikawa, Hiroyuki, Takahashi, Satoshi, Levy, Yaakov
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8481498/
https://www.ncbi.nlm.nih.gov/pubmed/34588591
http://dx.doi.org/10.1038/s41598-021-98955-0
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author Kamagata, Kiyoto
Iwaki, Nanako
Hazra, Milan Kumar
Kanbayashi, Saori
Banerjee, Trishit
Chiba, Rika
Sakomoto, Seiji
Gaudon, Virginie
Castaing, Bertrand
Takahashi, Hiroto
Kimura, Michiko
Oikawa, Hiroyuki
Takahashi, Satoshi
Levy, Yaakov
author_facet Kamagata, Kiyoto
Iwaki, Nanako
Hazra, Milan Kumar
Kanbayashi, Saori
Banerjee, Trishit
Chiba, Rika
Sakomoto, Seiji
Gaudon, Virginie
Castaing, Bertrand
Takahashi, Hiroto
Kimura, Michiko
Oikawa, Hiroyuki
Takahashi, Satoshi
Levy, Yaakov
author_sort Kamagata, Kiyoto
collection PubMed
description Despite the continuous discovery of host and guest proteins in membraneless organelles, complex host–guest interactions hinder the understanding of the molecular grammar governing liquid–liquid phase separation. In this study, we characterized the localization and dynamic properties of guest proteins in liquid droplets using single-molecule fluorescence microscopy. Eighteen guest proteins of different sizes, structures, and oligomeric states were examined in host p53 liquid droplets. Recruitment did not significantly depend on the structural properties of the guest proteins, but was moderately correlated with their length, total charge, and number of R and Y residues. In contrast, the diffusion of disordered guest proteins was comparable to that of host p53, whereas that of folded proteins varied widely. Molecular dynamics simulations suggest that folded proteins diffuse within the voids of the liquid droplet while interacting weakly with neighboring host proteins, whereas disordered proteins adapt their structures to form tight interactions with the host proteins. Our study provides insights into the key molecular principles of the localization and dynamics of guest proteins in liquid droplets.
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spelling pubmed-84814982021-10-01 Molecular principles of recruitment and dynamics of guest proteins in liquid droplets Kamagata, Kiyoto Iwaki, Nanako Hazra, Milan Kumar Kanbayashi, Saori Banerjee, Trishit Chiba, Rika Sakomoto, Seiji Gaudon, Virginie Castaing, Bertrand Takahashi, Hiroto Kimura, Michiko Oikawa, Hiroyuki Takahashi, Satoshi Levy, Yaakov Sci Rep Article Despite the continuous discovery of host and guest proteins in membraneless organelles, complex host–guest interactions hinder the understanding of the molecular grammar governing liquid–liquid phase separation. In this study, we characterized the localization and dynamic properties of guest proteins in liquid droplets using single-molecule fluorescence microscopy. Eighteen guest proteins of different sizes, structures, and oligomeric states were examined in host p53 liquid droplets. Recruitment did not significantly depend on the structural properties of the guest proteins, but was moderately correlated with their length, total charge, and number of R and Y residues. In contrast, the diffusion of disordered guest proteins was comparable to that of host p53, whereas that of folded proteins varied widely. Molecular dynamics simulations suggest that folded proteins diffuse within the voids of the liquid droplet while interacting weakly with neighboring host proteins, whereas disordered proteins adapt their structures to form tight interactions with the host proteins. Our study provides insights into the key molecular principles of the localization and dynamics of guest proteins in liquid droplets. Nature Publishing Group UK 2021-09-29 /pmc/articles/PMC8481498/ /pubmed/34588591 http://dx.doi.org/10.1038/s41598-021-98955-0 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Kamagata, Kiyoto
Iwaki, Nanako
Hazra, Milan Kumar
Kanbayashi, Saori
Banerjee, Trishit
Chiba, Rika
Sakomoto, Seiji
Gaudon, Virginie
Castaing, Bertrand
Takahashi, Hiroto
Kimura, Michiko
Oikawa, Hiroyuki
Takahashi, Satoshi
Levy, Yaakov
Molecular principles of recruitment and dynamics of guest proteins in liquid droplets
title Molecular principles of recruitment and dynamics of guest proteins in liquid droplets
title_full Molecular principles of recruitment and dynamics of guest proteins in liquid droplets
title_fullStr Molecular principles of recruitment and dynamics of guest proteins in liquid droplets
title_full_unstemmed Molecular principles of recruitment and dynamics of guest proteins in liquid droplets
title_short Molecular principles of recruitment and dynamics of guest proteins in liquid droplets
title_sort molecular principles of recruitment and dynamics of guest proteins in liquid droplets
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8481498/
https://www.ncbi.nlm.nih.gov/pubmed/34588591
http://dx.doi.org/10.1038/s41598-021-98955-0
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