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Disease control as an optimization problem

In the context of epidemiology, policies for disease control are often devised through a mixture of intuition and brute-force, whereby the set of logically conceivable policies is narrowed down to a small family described by a few parameters, following which linearization or grid search is used to i...

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Autores principales: Navascués, Miguel, Budroni, Costantino, Guryanova, Yelena
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8483379/
https://www.ncbi.nlm.nih.gov/pubmed/34591897
http://dx.doi.org/10.1371/journal.pone.0257958
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author Navascués, Miguel
Budroni, Costantino
Guryanova, Yelena
author_facet Navascués, Miguel
Budroni, Costantino
Guryanova, Yelena
author_sort Navascués, Miguel
collection PubMed
description In the context of epidemiology, policies for disease control are often devised through a mixture of intuition and brute-force, whereby the set of logically conceivable policies is narrowed down to a small family described by a few parameters, following which linearization or grid search is used to identify the optimal policy within the set. This scheme runs the risk of leaving out more complex (and perhaps counter-intuitive) policies for disease control that could tackle the disease more efficiently. In this article, we use techniques from convex optimization theory and machine learning to conduct optimizations over disease policies described by hundreds of parameters. In contrast to past approaches for policy optimization based on control theory, our framework can deal with arbitrary uncertainties on the initial conditions and model parameters controlling the spread of the disease, and stochastic models. In addition, our methods allow for optimization over policies which remain constant over weekly periods, specified by either continuous or discrete (e.g.: lockdown on/off) government measures. We illustrate our approach by minimizing the total time required to eradicate COVID-19 within the Susceptible-Exposed-Infected-Recovered (SEIR) model proposed by Kissler et al. (March, 2020).
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spelling pubmed-84833792021-10-01 Disease control as an optimization problem Navascués, Miguel Budroni, Costantino Guryanova, Yelena PLoS One Research Article In the context of epidemiology, policies for disease control are often devised through a mixture of intuition and brute-force, whereby the set of logically conceivable policies is narrowed down to a small family described by a few parameters, following which linearization or grid search is used to identify the optimal policy within the set. This scheme runs the risk of leaving out more complex (and perhaps counter-intuitive) policies for disease control that could tackle the disease more efficiently. In this article, we use techniques from convex optimization theory and machine learning to conduct optimizations over disease policies described by hundreds of parameters. In contrast to past approaches for policy optimization based on control theory, our framework can deal with arbitrary uncertainties on the initial conditions and model parameters controlling the spread of the disease, and stochastic models. In addition, our methods allow for optimization over policies which remain constant over weekly periods, specified by either continuous or discrete (e.g.: lockdown on/off) government measures. We illustrate our approach by minimizing the total time required to eradicate COVID-19 within the Susceptible-Exposed-Infected-Recovered (SEIR) model proposed by Kissler et al. (March, 2020). Public Library of Science 2021-09-30 /pmc/articles/PMC8483379/ /pubmed/34591897 http://dx.doi.org/10.1371/journal.pone.0257958 Text en © 2021 Navascués et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Navascués, Miguel
Budroni, Costantino
Guryanova, Yelena
Disease control as an optimization problem
title Disease control as an optimization problem
title_full Disease control as an optimization problem
title_fullStr Disease control as an optimization problem
title_full_unstemmed Disease control as an optimization problem
title_short Disease control as an optimization problem
title_sort disease control as an optimization problem
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8483379/
https://www.ncbi.nlm.nih.gov/pubmed/34591897
http://dx.doi.org/10.1371/journal.pone.0257958
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