Cargando…

Cell aging related genes can be used to characterize clinical prognoses and further stratify diffuse gliomas

Increasing evidence has indicated that senescent cells are associated with the glioma development. Thus, we aimed to explore the relationship between the cellular senescence gene profile and the clinical prognosis of diffuse glioma. In total, 699 gliomas from The Cancer Genome Atlas (TCGA) dataset w...

Descripción completa

Detalles Bibliográficos
Autores principales: Yang, Yang, Chen, Xin, Sun, Jianjun, Chen, Suhua, Yang, Chenlong, Ma, Qianquan, Yang, Jun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8484278/
https://www.ncbi.nlm.nih.gov/pubmed/34593910
http://dx.doi.org/10.1038/s41598-021-98913-w
_version_ 1784577288145207296
author Yang, Yang
Chen, Xin
Sun, Jianjun
Chen, Suhua
Yang, Chenlong
Ma, Qianquan
Yang, Jun
author_facet Yang, Yang
Chen, Xin
Sun, Jianjun
Chen, Suhua
Yang, Chenlong
Ma, Qianquan
Yang, Jun
author_sort Yang, Yang
collection PubMed
description Increasing evidence has indicated that senescent cells are associated with the glioma development. Thus, we aimed to explore the relationship between the cellular senescence gene profile and the clinical prognosis of diffuse glioma. In total, 699 gliomas from The Cancer Genome Atlas (TCGA) dataset were used as the training cohort and 693 gliomas from the Chinese Glioma Genome Atlas (CGGA) dataset were used as the validation cohort. Bioinformatics statistical methods are used to develop the risk signature and to study the prognostic value of the risk signature. We identified a 14-gene risk signature and its risk score was an independent prognostic factor (P < 0.001) in the validation dataset. The risk signature had better prognostic value than traditional factors for the 3- and 5-year survival rate. Importantly, the risk signature could further stratify gliomas in specific subgroups of World Health Organization (WHO) classification by the survival rate. Furthermore, the mRNA levels of genes involved in the cell cycle, cell division and other processes were significantly correlated with the risk score. Our study highlighted a 14-gene risk signature for further stratifying the outcomes of patients with gliomas with definite WHO subgroups. These results indicate the potential clinical implications of cell aging-related genes in gliomas.
format Online
Article
Text
id pubmed-8484278
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-84842782021-10-01 Cell aging related genes can be used to characterize clinical prognoses and further stratify diffuse gliomas Yang, Yang Chen, Xin Sun, Jianjun Chen, Suhua Yang, Chenlong Ma, Qianquan Yang, Jun Sci Rep Article Increasing evidence has indicated that senescent cells are associated with the glioma development. Thus, we aimed to explore the relationship between the cellular senescence gene profile and the clinical prognosis of diffuse glioma. In total, 699 gliomas from The Cancer Genome Atlas (TCGA) dataset were used as the training cohort and 693 gliomas from the Chinese Glioma Genome Atlas (CGGA) dataset were used as the validation cohort. Bioinformatics statistical methods are used to develop the risk signature and to study the prognostic value of the risk signature. We identified a 14-gene risk signature and its risk score was an independent prognostic factor (P < 0.001) in the validation dataset. The risk signature had better prognostic value than traditional factors for the 3- and 5-year survival rate. Importantly, the risk signature could further stratify gliomas in specific subgroups of World Health Organization (WHO) classification by the survival rate. Furthermore, the mRNA levels of genes involved in the cell cycle, cell division and other processes were significantly correlated with the risk score. Our study highlighted a 14-gene risk signature for further stratifying the outcomes of patients with gliomas with definite WHO subgroups. These results indicate the potential clinical implications of cell aging-related genes in gliomas. Nature Publishing Group UK 2021-09-30 /pmc/articles/PMC8484278/ /pubmed/34593910 http://dx.doi.org/10.1038/s41598-021-98913-w Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Yang, Yang
Chen, Xin
Sun, Jianjun
Chen, Suhua
Yang, Chenlong
Ma, Qianquan
Yang, Jun
Cell aging related genes can be used to characterize clinical prognoses and further stratify diffuse gliomas
title Cell aging related genes can be used to characterize clinical prognoses and further stratify diffuse gliomas
title_full Cell aging related genes can be used to characterize clinical prognoses and further stratify diffuse gliomas
title_fullStr Cell aging related genes can be used to characterize clinical prognoses and further stratify diffuse gliomas
title_full_unstemmed Cell aging related genes can be used to characterize clinical prognoses and further stratify diffuse gliomas
title_short Cell aging related genes can be used to characterize clinical prognoses and further stratify diffuse gliomas
title_sort cell aging related genes can be used to characterize clinical prognoses and further stratify diffuse gliomas
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8484278/
https://www.ncbi.nlm.nih.gov/pubmed/34593910
http://dx.doi.org/10.1038/s41598-021-98913-w
work_keys_str_mv AT yangyang cellagingrelatedgenescanbeusedtocharacterizeclinicalprognosesandfurtherstratifydiffusegliomas
AT chenxin cellagingrelatedgenescanbeusedtocharacterizeclinicalprognosesandfurtherstratifydiffusegliomas
AT sunjianjun cellagingrelatedgenescanbeusedtocharacterizeclinicalprognosesandfurtherstratifydiffusegliomas
AT chensuhua cellagingrelatedgenescanbeusedtocharacterizeclinicalprognosesandfurtherstratifydiffusegliomas
AT yangchenlong cellagingrelatedgenescanbeusedtocharacterizeclinicalprognosesandfurtherstratifydiffusegliomas
AT maqianquan cellagingrelatedgenescanbeusedtocharacterizeclinicalprognosesandfurtherstratifydiffusegliomas
AT yangjun cellagingrelatedgenescanbeusedtocharacterizeclinicalprognosesandfurtherstratifydiffusegliomas