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Multi-Task Deep Supervision on Attention R2U-Net for Brain Tumor Segmentation

Accurate automatic medical image segmentation technology plays an important role for the diagnosis and treatment of brain tumor. However, simple deep learning models are difficult to locate the tumor area and obtain accurate segmentation boundaries. In order to solve the problems above, we propose a...

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Detalles Bibliográficos
Autores principales: Ma, Shiqiang, Tang, Jijun, Guo, Fei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8484917/
https://www.ncbi.nlm.nih.gov/pubmed/34604039
http://dx.doi.org/10.3389/fonc.2021.704850
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author Ma, Shiqiang
Tang, Jijun
Guo, Fei
author_facet Ma, Shiqiang
Tang, Jijun
Guo, Fei
author_sort Ma, Shiqiang
collection PubMed
description Accurate automatic medical image segmentation technology plays an important role for the diagnosis and treatment of brain tumor. However, simple deep learning models are difficult to locate the tumor area and obtain accurate segmentation boundaries. In order to solve the problems above, we propose a 2D end-to-end model of attention R2U-Net with multi-task deep supervision (MTDS). MTDS can extract rich semantic information from images, obtain accurate segmentation boundaries, and prevent overfitting problems in deep learning. Furthermore, we propose the attention pre-activation residual module (APR), which is an attention mechanism based on multi-scale fusion methods. APR is suitable for a deep learning model to help the network locate the tumor area accurately. Finally, we evaluate our proposed model on the public BraTS 2020 validation dataset which consists of 125 cases, and got a competitive brain tumor segmentation result. Compared with the state-of-the-art brain tumor segmentation methods, our method has the characteristics of a small parameter and low computational cost.
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spelling pubmed-84849172021-10-02 Multi-Task Deep Supervision on Attention R2U-Net for Brain Tumor Segmentation Ma, Shiqiang Tang, Jijun Guo, Fei Front Oncol Oncology Accurate automatic medical image segmentation technology plays an important role for the diagnosis and treatment of brain tumor. However, simple deep learning models are difficult to locate the tumor area and obtain accurate segmentation boundaries. In order to solve the problems above, we propose a 2D end-to-end model of attention R2U-Net with multi-task deep supervision (MTDS). MTDS can extract rich semantic information from images, obtain accurate segmentation boundaries, and prevent overfitting problems in deep learning. Furthermore, we propose the attention pre-activation residual module (APR), which is an attention mechanism based on multi-scale fusion methods. APR is suitable for a deep learning model to help the network locate the tumor area accurately. Finally, we evaluate our proposed model on the public BraTS 2020 validation dataset which consists of 125 cases, and got a competitive brain tumor segmentation result. Compared with the state-of-the-art brain tumor segmentation methods, our method has the characteristics of a small parameter and low computational cost. Frontiers Media S.A. 2021-09-17 /pmc/articles/PMC8484917/ /pubmed/34604039 http://dx.doi.org/10.3389/fonc.2021.704850 Text en Copyright © 2021 Ma, Tang and Guo https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Oncology
Ma, Shiqiang
Tang, Jijun
Guo, Fei
Multi-Task Deep Supervision on Attention R2U-Net for Brain Tumor Segmentation
title Multi-Task Deep Supervision on Attention R2U-Net for Brain Tumor Segmentation
title_full Multi-Task Deep Supervision on Attention R2U-Net for Brain Tumor Segmentation
title_fullStr Multi-Task Deep Supervision on Attention R2U-Net for Brain Tumor Segmentation
title_full_unstemmed Multi-Task Deep Supervision on Attention R2U-Net for Brain Tumor Segmentation
title_short Multi-Task Deep Supervision on Attention R2U-Net for Brain Tumor Segmentation
title_sort multi-task deep supervision on attention r2u-net for brain tumor segmentation
topic Oncology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8484917/
https://www.ncbi.nlm.nih.gov/pubmed/34604039
http://dx.doi.org/10.3389/fonc.2021.704850
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