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Diagnosing underdetermination in stable isotope mixing models

Stable isotope mixing models (SIMMs) provide a powerful methodology for quantifying relative contributions of several sources to a mixture. They are widely used in the fields of ecology, geology, and archaeology. Although SIMMs have been rapidly evolved in the Bayesian framework, the underdeterminat...

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Autores principales: Osada, Yutaka, Matsubayashi, Jun, Tayasu, Ichiro
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8486109/
https://www.ncbi.nlm.nih.gov/pubmed/34597310
http://dx.doi.org/10.1371/journal.pone.0257818
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author Osada, Yutaka
Matsubayashi, Jun
Tayasu, Ichiro
author_facet Osada, Yutaka
Matsubayashi, Jun
Tayasu, Ichiro
author_sort Osada, Yutaka
collection PubMed
description Stable isotope mixing models (SIMMs) provide a powerful methodology for quantifying relative contributions of several sources to a mixture. They are widely used in the fields of ecology, geology, and archaeology. Although SIMMs have been rapidly evolved in the Bayesian framework, the underdetermination of mixing space remains problematic, i.e., the estimated relative contributions are incompletely identifiable. Here we propose a statistical method to quantitatively diagnose underdetermination in Bayesian SIMMs, and demonstrate the applications of our method (named β-dependent SIMM) using two motivated examples. Using a simulation example, we showed that the proposed method can rigorously quantify the expected underdetermination (i.e., intervals of β-dependent posterior) of relative contributions. Moreover, the application to the published field data highlighted two problematic aspects of the underdetermination: 1) ordinary SIMMs was difficult to quantify underdetermination of each source, and 2) the marginal posterior median was not necessarily consistent with the joint posterior peak in the case of underdetermination. Our study theoretically and numerically confirmed that β-dependent SIMMs provide a useful diagnostic tool for the underdetermined mixing problem. In addition to ordinary SIMMs, we recommend reporting the results of β-dependent SIMMs to obtain a biologically feasible and sound interpretation from stable isotope data.
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spelling pubmed-84861092021-10-02 Diagnosing underdetermination in stable isotope mixing models Osada, Yutaka Matsubayashi, Jun Tayasu, Ichiro PLoS One Research Article Stable isotope mixing models (SIMMs) provide a powerful methodology for quantifying relative contributions of several sources to a mixture. They are widely used in the fields of ecology, geology, and archaeology. Although SIMMs have been rapidly evolved in the Bayesian framework, the underdetermination of mixing space remains problematic, i.e., the estimated relative contributions are incompletely identifiable. Here we propose a statistical method to quantitatively diagnose underdetermination in Bayesian SIMMs, and demonstrate the applications of our method (named β-dependent SIMM) using two motivated examples. Using a simulation example, we showed that the proposed method can rigorously quantify the expected underdetermination (i.e., intervals of β-dependent posterior) of relative contributions. Moreover, the application to the published field data highlighted two problematic aspects of the underdetermination: 1) ordinary SIMMs was difficult to quantify underdetermination of each source, and 2) the marginal posterior median was not necessarily consistent with the joint posterior peak in the case of underdetermination. Our study theoretically and numerically confirmed that β-dependent SIMMs provide a useful diagnostic tool for the underdetermined mixing problem. In addition to ordinary SIMMs, we recommend reporting the results of β-dependent SIMMs to obtain a biologically feasible and sound interpretation from stable isotope data. Public Library of Science 2021-10-01 /pmc/articles/PMC8486109/ /pubmed/34597310 http://dx.doi.org/10.1371/journal.pone.0257818 Text en © 2021 Osada et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Osada, Yutaka
Matsubayashi, Jun
Tayasu, Ichiro
Diagnosing underdetermination in stable isotope mixing models
title Diagnosing underdetermination in stable isotope mixing models
title_full Diagnosing underdetermination in stable isotope mixing models
title_fullStr Diagnosing underdetermination in stable isotope mixing models
title_full_unstemmed Diagnosing underdetermination in stable isotope mixing models
title_short Diagnosing underdetermination in stable isotope mixing models
title_sort diagnosing underdetermination in stable isotope mixing models
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8486109/
https://www.ncbi.nlm.nih.gov/pubmed/34597310
http://dx.doi.org/10.1371/journal.pone.0257818
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