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Diagnosing underdetermination in stable isotope mixing models
Stable isotope mixing models (SIMMs) provide a powerful methodology for quantifying relative contributions of several sources to a mixture. They are widely used in the fields of ecology, geology, and archaeology. Although SIMMs have been rapidly evolved in the Bayesian framework, the underdeterminat...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8486109/ https://www.ncbi.nlm.nih.gov/pubmed/34597310 http://dx.doi.org/10.1371/journal.pone.0257818 |
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author | Osada, Yutaka Matsubayashi, Jun Tayasu, Ichiro |
author_facet | Osada, Yutaka Matsubayashi, Jun Tayasu, Ichiro |
author_sort | Osada, Yutaka |
collection | PubMed |
description | Stable isotope mixing models (SIMMs) provide a powerful methodology for quantifying relative contributions of several sources to a mixture. They are widely used in the fields of ecology, geology, and archaeology. Although SIMMs have been rapidly evolved in the Bayesian framework, the underdetermination of mixing space remains problematic, i.e., the estimated relative contributions are incompletely identifiable. Here we propose a statistical method to quantitatively diagnose underdetermination in Bayesian SIMMs, and demonstrate the applications of our method (named β-dependent SIMM) using two motivated examples. Using a simulation example, we showed that the proposed method can rigorously quantify the expected underdetermination (i.e., intervals of β-dependent posterior) of relative contributions. Moreover, the application to the published field data highlighted two problematic aspects of the underdetermination: 1) ordinary SIMMs was difficult to quantify underdetermination of each source, and 2) the marginal posterior median was not necessarily consistent with the joint posterior peak in the case of underdetermination. Our study theoretically and numerically confirmed that β-dependent SIMMs provide a useful diagnostic tool for the underdetermined mixing problem. In addition to ordinary SIMMs, we recommend reporting the results of β-dependent SIMMs to obtain a biologically feasible and sound interpretation from stable isotope data. |
format | Online Article Text |
id | pubmed-8486109 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-84861092021-10-02 Diagnosing underdetermination in stable isotope mixing models Osada, Yutaka Matsubayashi, Jun Tayasu, Ichiro PLoS One Research Article Stable isotope mixing models (SIMMs) provide a powerful methodology for quantifying relative contributions of several sources to a mixture. They are widely used in the fields of ecology, geology, and archaeology. Although SIMMs have been rapidly evolved in the Bayesian framework, the underdetermination of mixing space remains problematic, i.e., the estimated relative contributions are incompletely identifiable. Here we propose a statistical method to quantitatively diagnose underdetermination in Bayesian SIMMs, and demonstrate the applications of our method (named β-dependent SIMM) using two motivated examples. Using a simulation example, we showed that the proposed method can rigorously quantify the expected underdetermination (i.e., intervals of β-dependent posterior) of relative contributions. Moreover, the application to the published field data highlighted two problematic aspects of the underdetermination: 1) ordinary SIMMs was difficult to quantify underdetermination of each source, and 2) the marginal posterior median was not necessarily consistent with the joint posterior peak in the case of underdetermination. Our study theoretically and numerically confirmed that β-dependent SIMMs provide a useful diagnostic tool for the underdetermined mixing problem. In addition to ordinary SIMMs, we recommend reporting the results of β-dependent SIMMs to obtain a biologically feasible and sound interpretation from stable isotope data. Public Library of Science 2021-10-01 /pmc/articles/PMC8486109/ /pubmed/34597310 http://dx.doi.org/10.1371/journal.pone.0257818 Text en © 2021 Osada et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Osada, Yutaka Matsubayashi, Jun Tayasu, Ichiro Diagnosing underdetermination in stable isotope mixing models |
title | Diagnosing underdetermination in stable isotope mixing models |
title_full | Diagnosing underdetermination in stable isotope mixing models |
title_fullStr | Diagnosing underdetermination in stable isotope mixing models |
title_full_unstemmed | Diagnosing underdetermination in stable isotope mixing models |
title_short | Diagnosing underdetermination in stable isotope mixing models |
title_sort | diagnosing underdetermination in stable isotope mixing models |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8486109/ https://www.ncbi.nlm.nih.gov/pubmed/34597310 http://dx.doi.org/10.1371/journal.pone.0257818 |
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