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New complete mitogenome datasets and their characterization of the European catfish (Silurus glanis)

We present new complete mitogenome sequences of Silurus glanis (S. glanis) from 4 samples such as male and female individuals from two countries (Hungary, Czech Republic). The complete mitochondria were determined from genome sequencing by using Illumina MiSeq platform resulting in long, 300 bp. pai...

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Autores principales: Székvári, Kinga, Szabolcsi, Zoltán, Kutasy, Barbara, Hegedűs, Géza, Virág, Eszter
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8487008/
https://www.ncbi.nlm.nih.gov/pubmed/34632016
http://dx.doi.org/10.1016/j.dib.2021.107418
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author Székvári, Kinga
Szabolcsi, Zoltán
Kutasy, Barbara
Hegedűs, Géza
Virág, Eszter
author_facet Székvári, Kinga
Szabolcsi, Zoltán
Kutasy, Barbara
Hegedűs, Géza
Virág, Eszter
author_sort Székvári, Kinga
collection PubMed
description We present new complete mitogenome sequences of Silurus glanis (S. glanis) from 4 samples such as male and female individuals from two countries (Hungary, Czech Republic). The complete mitochondria were determined from genome sequencing by using Illumina MiSeq platform resulting in long, 300 bp. paired-end reads. De novo assembly was performed resulting in one nod (scaffold) covering the total mitochondria in each sample. The mitochondrial genomes were circular, double-stranded molecules of 16,524 bp in length and consisted of 13 protein-coding genes (PCGs), 2 ribosomal RNA genes, 22 transfer RNA genes, and 1 control region. These sequences were deposited in the NCBI GeneBank under the accession numbers (MW796040, MW796041, MW796042, MW796043) and compared with the only available S. glanis mitochondrial genome (NC_014261.1) sequenced by unidentified technology and showed 99% similarity. We found in seq1 82, in seq2 82, seq3 83, seq4 82 nucleotide alterations involving 10 protein-coding genes and meaning 29 amino acid substitutions as well.
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spelling pubmed-84870082021-10-07 New complete mitogenome datasets and their characterization of the European catfish (Silurus glanis) Székvári, Kinga Szabolcsi, Zoltán Kutasy, Barbara Hegedűs, Géza Virág, Eszter Data Brief Data Article We present new complete mitogenome sequences of Silurus glanis (S. glanis) from 4 samples such as male and female individuals from two countries (Hungary, Czech Republic). The complete mitochondria were determined from genome sequencing by using Illumina MiSeq platform resulting in long, 300 bp. paired-end reads. De novo assembly was performed resulting in one nod (scaffold) covering the total mitochondria in each sample. The mitochondrial genomes were circular, double-stranded molecules of 16,524 bp in length and consisted of 13 protein-coding genes (PCGs), 2 ribosomal RNA genes, 22 transfer RNA genes, and 1 control region. These sequences were deposited in the NCBI GeneBank under the accession numbers (MW796040, MW796041, MW796042, MW796043) and compared with the only available S. glanis mitochondrial genome (NC_014261.1) sequenced by unidentified technology and showed 99% similarity. We found in seq1 82, in seq2 82, seq3 83, seq4 82 nucleotide alterations involving 10 protein-coding genes and meaning 29 amino acid substitutions as well. Elsevier 2021-09-23 /pmc/articles/PMC8487008/ /pubmed/34632016 http://dx.doi.org/10.1016/j.dib.2021.107418 Text en © 2021 The Authors. Published by Elsevier Inc. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Data Article
Székvári, Kinga
Szabolcsi, Zoltán
Kutasy, Barbara
Hegedűs, Géza
Virág, Eszter
New complete mitogenome datasets and their characterization of the European catfish (Silurus glanis)
title New complete mitogenome datasets and their characterization of the European catfish (Silurus glanis)
title_full New complete mitogenome datasets and their characterization of the European catfish (Silurus glanis)
title_fullStr New complete mitogenome datasets and their characterization of the European catfish (Silurus glanis)
title_full_unstemmed New complete mitogenome datasets and their characterization of the European catfish (Silurus glanis)
title_short New complete mitogenome datasets and their characterization of the European catfish (Silurus glanis)
title_sort new complete mitogenome datasets and their characterization of the european catfish (silurus glanis)
topic Data Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8487008/
https://www.ncbi.nlm.nih.gov/pubmed/34632016
http://dx.doi.org/10.1016/j.dib.2021.107418
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