Cargando…

Next generation sequencing based in-house HIV genotyping method: validation report

BACKGROUND: HIV genotyping has had a significant impact on the care and treatment of HIV/AIDS. At a clinical level, the test guides physicians on the choice of treatment regimens. At the surveillance level, it informs policy on consolidated treatment guidelines and microbial resistance control strat...

Descripción completa

Detalles Bibliográficos
Autores principales:	Ayitewala, Alisen, Ssewanyana, Isaac, Kiyaga, Charles
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2021
Materias:	Methodology
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8487565/ https://www.ncbi.nlm.nih.gov/pubmed/34600538 http://dx.doi.org/10.1186/s12981-021-00390-8

Ejemplares similares

Genotyping 1000 yeast strains by next-generation sequencing
por: Wilkening, Stefan, et al.
Publicado: (2013)

HLA genotyping by next-generation sequencing of complementary DNA
por: Segawa, Hidenobu, et al.
Publicado: (2017)

Comparison of HIV drug resistance profiles across HIV-1 subtypes A and D for patients receiving a tenofovir-based and zidovudine-based first line regimens in Uganda
por: Ayitewala, Alisen, et al.
Publicado: (2020)

HLAscan: genotyping of the HLA region using next-generation sequencing data
por: Ka, Sojeong, et al.
Publicado: (2017)

A simple method to estimate the in-house limit of detection for genetic mutations with low allele frequencies in whole-exome sequencing analysis by next-generation sequencing
por: Miura, Takumi, et al.
Publicado: (2021)

All-in-one sequencing: an improved library preparation method for cost-effective and high-throughput next-generation sequencing
por: Zhao, Sheng, et al.
Publicado: (2020)

An assembly and alignment-free method of phylogeny reconstruction from next-generation sequencing data
por: Fan, Huan, et al.
Publicado: (2015)

BAMscale: quantification of next-generation sequencing peaks and generation of scaled coverage tracks
por: Pongor, Lorinc S., et al.
Publicado: (2020)

High-throughput multiplex HLA genotyping by next-generation sequencing using multi-locus individual tagging
por: Ehrenberg, Philip K, et al.
Publicado: (2014)

Next generation sequencing and de novo transcriptomics to study gene evolution
por: Jayasena, Achala S, et al.
Publicado: (2014)

New methods for next generation sequencing based microRNA expression profiling
por: Buermans, Henk PJ, et al.
Publicado: (2010)

Masking as an effective quality control method for next-generation sequencing data analysis
por: Yun, Sajung, et al.
Publicado: (2014)

Protocol: a simple method for extracting next-generation sequencing quality genomic DNA from recalcitrant plant species
por: Healey, Adam, et al.
Publicado: (2014)

Identification of piggyBac-mediated insertions in Plasmodium berghei by next generation sequencing
por: Cao, Yi, et al.
Publicado: (2013)

Next generation sequencing of viral RNA genomes
por: Marston, Denise A, et al.
Publicado: (2013)

Rapid, scalable and highly automated HLA genotyping using next-generation sequencing: a transition from research to diagnostics
por: Danzer, Martin, et al.
Publicado: (2013)

A next-generation sequencing method for overcoming the multiple gene copy problem in polyploid phylogenetics, applied to Poa grasses
por: Griffin, Philippa C, et al.
Publicado: (2011)

Application of next-generation sequencing for 24-chromosome aneuploidy screening of human preimplantation embryos
por: Zheng, Haiyan, et al.
Publicado: (2015)

Comparison of next generation sequencing technologies for transcriptome characterization
por: Wall, P Kerr, et al.
Publicado: (2009)

Next-generation sequencing library construction on a surface
por: Feng, Kuan, et al.
Publicado: (2018)

Phase-defined complete sequencing of the HLA genes by next-generation sequencing
por: Hosomichi, Kazuyoshi, et al.
Publicado: (2013)

Focused, high accuracy 5-methylcytosine quantitation with base resolution by benchtop next-generation sequencing
por: Masser, Dustin R, et al.
Publicado: (2013)

Approaches to the detection of recessive effects using next generation sequencing data from outbred populations
por: Curtis, David
Publicado: (2013)

High quality RNA extraction from Maqui berry for its application in next-generation sequencing
por: Sánchez, Carolina, et al.
Publicado: (2016)

Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data
por: Novák, Petr, et al.
Publicado: (2010)

Next-generation sequencing for HLA typing of class I loci
por: Erlich, Rachel L, et al.
Publicado: (2011)

SeqCNV: a novel method for identification of copy number variations in targeted next-generation sequencing data
por: Chen, Yong, et al.
Publicado: (2017)

Co-extraction of genomic DNA & total RNA from recalcitrant woody tissues for next-generation sequencing studies
por: Zeng, Zhen, et al.
Publicado: (2018)

Transcriptomics Signature from Next-Generation Sequencing Data Reveals New Transcriptomic Biomarkers Related to Prostate Cancer
por: Alkhateeb, Abedalrhman, et al.
Publicado: (2019)

Mosquitoes as a feasible sentinel group for anti-malarial resistance surveillance by Next Generation Sequencing of Plasmodium falciparum
por: Smith-Aguasca, Rebecca, et al.
Publicado: (2019)

Combinatorial analysis and algorithms for quasispecies reconstruction using next-generation sequencing
por: Prosperi, Mattia CF, et al.
Publicado: (2011)

Fluorescent amplification for next generation sequencing (FA-NGS) library preparation
por: Chiniquy, Jennifer, et al.
Publicado: (2020)

Plant-RRBS, a bisulfite and next-generation sequencing-based methylome profiling method enriching for coverage of cytosine positions
por: Schmidt, Martin, et al.
Publicado: (2017)

Development and evaluation of a non-ribosomal random PCR and next-generation sequencing based assay for detection and sequencing of hand, foot and mouth disease pathogens
por: Nguyen, Anh To, et al.
Publicado: (2016)

Identification of factors required for meristem function in Arabidopsis using a novel next generation sequencing fast forward genetics approach
por: Mokry, Michal, et al.
Publicado: (2011)

Cost-efficient multiplex PCR for routine genotyping of up to nine classical HLA loci in a single analytical run of multiple samples by next generation sequencing
por: Ozaki, Yuki, et al.
Publicado: (2015)

Antithrombin diagnostics by mass spectrometry: Development and analytical validation of a next-generation test
por: Kruijt, Mirjam, et al.
Publicado: (2023)

In-house ELISA protocols for capsid p24 detection of diverse HIV isolates
por: Molina, Mariano A., et al.
Publicado: (2023)

Exome-wide DNA capture and next generation sequencing in domestic and wild species
por: Cosart, Ted, et al.
Publicado: (2011)

Optimizing illumina next-generation sequencing library preparation for extremely at-biased genomes
por: Oyola, Samuel O, et al.
Publicado: (2012)

Cannot write session to /tmp/vufind_sessions/sess_3ulqaga27mpgpdafh951bglgv5