Cargando…

Exploring Diagnostic Biomarkers and Comorbid Pathogenesis for Osteoarthritis and Metabolic Syndrome via Bioinformatics Approach

BACKGROUND: Metabolic syndrome (MS) has grown in recognition to contribute to the pathogenesis of osteoarthritis (OA), which is the most prevalent arthritis characterized by joint dysfunction. However, the specific mechanism between OA and MS remains unclear. METHODS: The gene expression profiles an...

Descripción completa

Detalles Bibliográficos
Autores principales: Jiang, Xiang, Zhong, Rongzhou, Dai, Weifan, Huang, Hui, Yu, Qinyuan, Zhang, Jiji Alexander, Cai, Yanrong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Dove 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8487858/
https://www.ncbi.nlm.nih.gov/pubmed/34616175
http://dx.doi.org/10.2147/IJGM.S325561
_version_ 1784578044242952192
author Jiang, Xiang
Zhong, Rongzhou
Dai, Weifan
Huang, Hui
Yu, Qinyuan
Zhang, Jiji Alexander
Cai, Yanrong
author_facet Jiang, Xiang
Zhong, Rongzhou
Dai, Weifan
Huang, Hui
Yu, Qinyuan
Zhang, Jiji Alexander
Cai, Yanrong
author_sort Jiang, Xiang
collection PubMed
description BACKGROUND: Metabolic syndrome (MS) has grown in recognition to contribute to the pathogenesis of osteoarthritis (OA), which is the most prevalent arthritis characterized by joint dysfunction. However, the specific mechanism between OA and MS remains unclear. METHODS: The gene expression profiles and clinical information data of OA and MS were retrieved from the Gene Expression Omnibus (GEO) database. The genes in the key module of MS were identified by weighted gene co-expression network analysis (WGCNA), which intersected with the differentially expressed genes (DEGs) between control and MS samples to obtain hub genes for MS. The potential functions and pathways of hub genes were detected through the Gene Ontology (GO) and Kyoto Encyclopedia of Gene and Genome (KEGG) analyses. The genes involved in the different KEGG pathways between the control and OA samples overlapped with the DEGs between the two groups via the Venn analysis to gain the hub genes for OA affected by MS (MOHGs). Additionally, the least absolute shrinkage and selection operator (LASSO) was performed on the MOHGs to establish a diagnostic model for each disease. RESULTS: A total of 61 hub genes for MS were identified that significantly enriched in platelet activation, complement and coagulation cascades, and hematopoietic cell lineage. Besides, 4 candidate genes (ELOVL7, F2RL3, GP9, and ITGA2B) were screened among the 6 MOHGs to construct a diagnostic model, showing good performance for distinguishing controls from patients with MS and OA. GSEA suggested that these diagnostic genes were closely associated with immune response, adipocytokine signaling, fatty acid metabolism, cell cycle, and platelet activation. CONCLUSION: Taken together, we identified 4 potential gene biomarkers for diagnosing MS and OA patients, providing a theoretical basis and reference for the diagnostics and treatment targets of MS and OA.
format Online
Article
Text
id pubmed-8487858
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Dove
record_format MEDLINE/PubMed
spelling pubmed-84878582021-10-05 Exploring Diagnostic Biomarkers and Comorbid Pathogenesis for Osteoarthritis and Metabolic Syndrome via Bioinformatics Approach Jiang, Xiang Zhong, Rongzhou Dai, Weifan Huang, Hui Yu, Qinyuan Zhang, Jiji Alexander Cai, Yanrong Int J Gen Med Original Research BACKGROUND: Metabolic syndrome (MS) has grown in recognition to contribute to the pathogenesis of osteoarthritis (OA), which is the most prevalent arthritis characterized by joint dysfunction. However, the specific mechanism between OA and MS remains unclear. METHODS: The gene expression profiles and clinical information data of OA and MS were retrieved from the Gene Expression Omnibus (GEO) database. The genes in the key module of MS were identified by weighted gene co-expression network analysis (WGCNA), which intersected with the differentially expressed genes (DEGs) between control and MS samples to obtain hub genes for MS. The potential functions and pathways of hub genes were detected through the Gene Ontology (GO) and Kyoto Encyclopedia of Gene and Genome (KEGG) analyses. The genes involved in the different KEGG pathways between the control and OA samples overlapped with the DEGs between the two groups via the Venn analysis to gain the hub genes for OA affected by MS (MOHGs). Additionally, the least absolute shrinkage and selection operator (LASSO) was performed on the MOHGs to establish a diagnostic model for each disease. RESULTS: A total of 61 hub genes for MS were identified that significantly enriched in platelet activation, complement and coagulation cascades, and hematopoietic cell lineage. Besides, 4 candidate genes (ELOVL7, F2RL3, GP9, and ITGA2B) were screened among the 6 MOHGs to construct a diagnostic model, showing good performance for distinguishing controls from patients with MS and OA. GSEA suggested that these diagnostic genes were closely associated with immune response, adipocytokine signaling, fatty acid metabolism, cell cycle, and platelet activation. CONCLUSION: Taken together, we identified 4 potential gene biomarkers for diagnosing MS and OA patients, providing a theoretical basis and reference for the diagnostics and treatment targets of MS and OA. Dove 2021-09-29 /pmc/articles/PMC8487858/ /pubmed/34616175 http://dx.doi.org/10.2147/IJGM.S325561 Text en © 2021 Jiang et al. https://creativecommons.org/licenses/by-nc/3.0/This work is published and licensed by Dove Medical Press Limited. The full terms of this license are available at https://www.dovepress.com/terms.php and incorporate the Creative Commons Attribution – Non Commercial (unported, v3.0) License (http://creativecommons.org/licenses/by-nc/3.0/ (https://creativecommons.org/licenses/by-nc/3.0/) ). By accessing the work you hereby accept the Terms. Non-commercial uses of the work are permitted without any further permission from Dove Medical Press Limited, provided the work is properly attributed. For permission for commercial use of this work, please see paragraphs 4.2 and 5 of our Terms (https://www.dovepress.com/terms.php).
spellingShingle Original Research
Jiang, Xiang
Zhong, Rongzhou
Dai, Weifan
Huang, Hui
Yu, Qinyuan
Zhang, Jiji Alexander
Cai, Yanrong
Exploring Diagnostic Biomarkers and Comorbid Pathogenesis for Osteoarthritis and Metabolic Syndrome via Bioinformatics Approach
title Exploring Diagnostic Biomarkers and Comorbid Pathogenesis for Osteoarthritis and Metabolic Syndrome via Bioinformatics Approach
title_full Exploring Diagnostic Biomarkers and Comorbid Pathogenesis for Osteoarthritis and Metabolic Syndrome via Bioinformatics Approach
title_fullStr Exploring Diagnostic Biomarkers and Comorbid Pathogenesis for Osteoarthritis and Metabolic Syndrome via Bioinformatics Approach
title_full_unstemmed Exploring Diagnostic Biomarkers and Comorbid Pathogenesis for Osteoarthritis and Metabolic Syndrome via Bioinformatics Approach
title_short Exploring Diagnostic Biomarkers and Comorbid Pathogenesis for Osteoarthritis and Metabolic Syndrome via Bioinformatics Approach
title_sort exploring diagnostic biomarkers and comorbid pathogenesis for osteoarthritis and metabolic syndrome via bioinformatics approach
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8487858/
https://www.ncbi.nlm.nih.gov/pubmed/34616175
http://dx.doi.org/10.2147/IJGM.S325561
work_keys_str_mv AT jiangxiang exploringdiagnosticbiomarkersandcomorbidpathogenesisforosteoarthritisandmetabolicsyndromeviabioinformaticsapproach
AT zhongrongzhou exploringdiagnosticbiomarkersandcomorbidpathogenesisforosteoarthritisandmetabolicsyndromeviabioinformaticsapproach
AT daiweifan exploringdiagnosticbiomarkersandcomorbidpathogenesisforosteoarthritisandmetabolicsyndromeviabioinformaticsapproach
AT huanghui exploringdiagnosticbiomarkersandcomorbidpathogenesisforosteoarthritisandmetabolicsyndromeviabioinformaticsapproach
AT yuqinyuan exploringdiagnosticbiomarkersandcomorbidpathogenesisforosteoarthritisandmetabolicsyndromeviabioinformaticsapproach
AT zhangjijialexander exploringdiagnosticbiomarkersandcomorbidpathogenesisforosteoarthritisandmetabolicsyndromeviabioinformaticsapproach
AT caiyanrong exploringdiagnosticbiomarkersandcomorbidpathogenesisforosteoarthritisandmetabolicsyndromeviabioinformaticsapproach