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m(6)A Methylation Modification Patterns and Tumor Microenvironment Infiltration Characterization in Pancreatic Cancer

Recent studies have shown that RNA N(6)-methyladenosine (m(6)A) modification plays an important part in tumorigenesis and immune-related biological processes. However, the comprehensive landscape of immune cell infiltration characteristics in the tumor microenvironment (TME) mediated by m(6)A methyl...

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Autores principales: Sun, Mengyu, Xie, Meng, Zhang, Tongyue, Wang, Yijun, Huang, Wenjie, Xia, Limin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8488339/
https://www.ncbi.nlm.nih.gov/pubmed/34616403
http://dx.doi.org/10.3389/fimmu.2021.739768
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author Sun, Mengyu
Xie, Meng
Zhang, Tongyue
Wang, Yijun
Huang, Wenjie
Xia, Limin
author_facet Sun, Mengyu
Xie, Meng
Zhang, Tongyue
Wang, Yijun
Huang, Wenjie
Xia, Limin
author_sort Sun, Mengyu
collection PubMed
description Recent studies have shown that RNA N(6)-methyladenosine (m(6)A) modification plays an important part in tumorigenesis and immune-related biological processes. However, the comprehensive landscape of immune cell infiltration characteristics in the tumor microenvironment (TME) mediated by m(6)A methylation modification in pancreatic cancer has not yet been elucidated. Based on consensus clustering algorithm, we identified two m(6)A modification subtypes and then determined two m(6)A-related gene subtypes among 434 pancreatic cancer samples. The TME characteristics of the identified gene subtypes were highly consistent with the immune-hot phenotype and the immune-cold phenotype respectively. According to the m(6)A score extracted from the m(6)A-related signature genes, patients can be divided into high and low m(6)A score groups. The low score group displayed a better prognosis and relatively strong immune infiltration. Further analysis showed that low m(6)A score correlated with lower tumor mutation burden and PD-L1 expression, and indicated a better response to immunotherapy. In general, m(6)A methylation modification is closely related to the diversity and complexity of immune infiltration in TME. Evaluating the m(6)A modification pattern and immune infiltration characteristics of individual tumors can help deepen our understanding of the tumor microenvironment landscape and promote a more effective clinical practice of immunotherapy.
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spelling pubmed-84883392021-10-05 m(6)A Methylation Modification Patterns and Tumor Microenvironment Infiltration Characterization in Pancreatic Cancer Sun, Mengyu Xie, Meng Zhang, Tongyue Wang, Yijun Huang, Wenjie Xia, Limin Front Immunol Immunology Recent studies have shown that RNA N(6)-methyladenosine (m(6)A) modification plays an important part in tumorigenesis and immune-related biological processes. However, the comprehensive landscape of immune cell infiltration characteristics in the tumor microenvironment (TME) mediated by m(6)A methylation modification in pancreatic cancer has not yet been elucidated. Based on consensus clustering algorithm, we identified two m(6)A modification subtypes and then determined two m(6)A-related gene subtypes among 434 pancreatic cancer samples. The TME characteristics of the identified gene subtypes were highly consistent with the immune-hot phenotype and the immune-cold phenotype respectively. According to the m(6)A score extracted from the m(6)A-related signature genes, patients can be divided into high and low m(6)A score groups. The low score group displayed a better prognosis and relatively strong immune infiltration. Further analysis showed that low m(6)A score correlated with lower tumor mutation burden and PD-L1 expression, and indicated a better response to immunotherapy. In general, m(6)A methylation modification is closely related to the diversity and complexity of immune infiltration in TME. Evaluating the m(6)A modification pattern and immune infiltration characteristics of individual tumors can help deepen our understanding of the tumor microenvironment landscape and promote a more effective clinical practice of immunotherapy. Frontiers Media S.A. 2021-09-20 /pmc/articles/PMC8488339/ /pubmed/34616403 http://dx.doi.org/10.3389/fimmu.2021.739768 Text en Copyright © 2021 Sun, Xie, Zhang, Wang, Huang and Xia https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Immunology
Sun, Mengyu
Xie, Meng
Zhang, Tongyue
Wang, Yijun
Huang, Wenjie
Xia, Limin
m(6)A Methylation Modification Patterns and Tumor Microenvironment Infiltration Characterization in Pancreatic Cancer
title m(6)A Methylation Modification Patterns and Tumor Microenvironment Infiltration Characterization in Pancreatic Cancer
title_full m(6)A Methylation Modification Patterns and Tumor Microenvironment Infiltration Characterization in Pancreatic Cancer
title_fullStr m(6)A Methylation Modification Patterns and Tumor Microenvironment Infiltration Characterization in Pancreatic Cancer
title_full_unstemmed m(6)A Methylation Modification Patterns and Tumor Microenvironment Infiltration Characterization in Pancreatic Cancer
title_short m(6)A Methylation Modification Patterns and Tumor Microenvironment Infiltration Characterization in Pancreatic Cancer
title_sort m(6)a methylation modification patterns and tumor microenvironment infiltration characterization in pancreatic cancer
topic Immunology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8488339/
https://www.ncbi.nlm.nih.gov/pubmed/34616403
http://dx.doi.org/10.3389/fimmu.2021.739768
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