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Insight into the fundamental trade-offs of diffusion MRI from polarization-sensitive optical coherence tomography in ex vivo human brain

In the first study comparing high angular resolution diffusion MRI (dMRI) in the human brain to axonal orientation measurements from polarization-sensitive optical coherence tomography (PSOCT), we compare the accuracy of orientation estimates from various dMRI sampling schemes and reconstruction met...

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Autores principales: Jones, Robert, Grisot, Giorgia, Augustinack, Jean, Magnain, Caroline, Boas, David A., Fischl, Bruce, Wang, Hui, Yendiki, Anastasia
Formato: Online Artículo Texto
Lenguaje:English
Publicado: 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8488979/
https://www.ncbi.nlm.nih.gov/pubmed/32151760
http://dx.doi.org/10.1016/j.neuroimage.2020.116704
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author Jones, Robert
Grisot, Giorgia
Augustinack, Jean
Magnain, Caroline
Boas, David A.
Fischl, Bruce
Wang, Hui
Yendiki, Anastasia
author_facet Jones, Robert
Grisot, Giorgia
Augustinack, Jean
Magnain, Caroline
Boas, David A.
Fischl, Bruce
Wang, Hui
Yendiki, Anastasia
author_sort Jones, Robert
collection PubMed
description In the first study comparing high angular resolution diffusion MRI (dMRI) in the human brain to axonal orientation measurements from polarization-sensitive optical coherence tomography (PSOCT), we compare the accuracy of orientation estimates from various dMRI sampling schemes and reconstruction methods. We find that, if the reconstruction approach is chosen carefully, single-shell dMRI data can yield the same accuracy as multi-shell data, and only moderately lower accuracy than a full Cartesian-grid sampling scheme. Our results suggest that current dMRI reconstruction approaches do not benefit substantially from ultra-high b-values or from very large numbers of diffusion-encoding directions. We also show that accuracy remains stable across dMRI voxel sizes of 1 mm or smaller but degrades at 2 mm, particularly in areas of complex white-matter architecture. We also show that, as the spatial resolution is reduced, axonal configurations in a dMRI voxel can no longer be modeled as a small set of distinct axon populations, violating an assumption that is sometimes made by dMRI reconstruction techniques. Our findings have implications for in vivo studies and illustrate the value of PSOCT as a source of ground-truth measurements of white-matter organization that does not suffer from the distortions typical of histological techniques.
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spelling pubmed-84889792021-10-04 Insight into the fundamental trade-offs of diffusion MRI from polarization-sensitive optical coherence tomography in ex vivo human brain Jones, Robert Grisot, Giorgia Augustinack, Jean Magnain, Caroline Boas, David A. Fischl, Bruce Wang, Hui Yendiki, Anastasia Neuroimage Article In the first study comparing high angular resolution diffusion MRI (dMRI) in the human brain to axonal orientation measurements from polarization-sensitive optical coherence tomography (PSOCT), we compare the accuracy of orientation estimates from various dMRI sampling schemes and reconstruction methods. We find that, if the reconstruction approach is chosen carefully, single-shell dMRI data can yield the same accuracy as multi-shell data, and only moderately lower accuracy than a full Cartesian-grid sampling scheme. Our results suggest that current dMRI reconstruction approaches do not benefit substantially from ultra-high b-values or from very large numbers of diffusion-encoding directions. We also show that accuracy remains stable across dMRI voxel sizes of 1 mm or smaller but degrades at 2 mm, particularly in areas of complex white-matter architecture. We also show that, as the spatial resolution is reduced, axonal configurations in a dMRI voxel can no longer be modeled as a small set of distinct axon populations, violating an assumption that is sometimes made by dMRI reconstruction techniques. Our findings have implications for in vivo studies and illustrate the value of PSOCT as a source of ground-truth measurements of white-matter organization that does not suffer from the distortions typical of histological techniques. 2020-03-06 2020-07-01 /pmc/articles/PMC8488979/ /pubmed/32151760 http://dx.doi.org/10.1016/j.neuroimage.2020.116704 Text en https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) ).
spellingShingle Article
Jones, Robert
Grisot, Giorgia
Augustinack, Jean
Magnain, Caroline
Boas, David A.
Fischl, Bruce
Wang, Hui
Yendiki, Anastasia
Insight into the fundamental trade-offs of diffusion MRI from polarization-sensitive optical coherence tomography in ex vivo human brain
title Insight into the fundamental trade-offs of diffusion MRI from polarization-sensitive optical coherence tomography in ex vivo human brain
title_full Insight into the fundamental trade-offs of diffusion MRI from polarization-sensitive optical coherence tomography in ex vivo human brain
title_fullStr Insight into the fundamental trade-offs of diffusion MRI from polarization-sensitive optical coherence tomography in ex vivo human brain
title_full_unstemmed Insight into the fundamental trade-offs of diffusion MRI from polarization-sensitive optical coherence tomography in ex vivo human brain
title_short Insight into the fundamental trade-offs of diffusion MRI from polarization-sensitive optical coherence tomography in ex vivo human brain
title_sort insight into the fundamental trade-offs of diffusion mri from polarization-sensitive optical coherence tomography in ex vivo human brain
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8488979/
https://www.ncbi.nlm.nih.gov/pubmed/32151760
http://dx.doi.org/10.1016/j.neuroimage.2020.116704
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