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Expression profile of epithelial-mesenchymal transition-related genes as a prognostic biomarker for endometrial cancer
Epithelial-mesenchymal transition (EMT) is regulated by inducible factors, transcription factors, and a series of genes involved in diverse signaling pathways, which are correlated with tumor invasion and progression. In the present study, we analyzed the expression profile data of 1169 EMT-related...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Ivyspring International Publisher
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8489121/ https://www.ncbi.nlm.nih.gov/pubmed/34659539 http://dx.doi.org/10.7150/jca.62729 |
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author | Ye, Lei Wang, Xiaojun Li, Bilan |
author_facet | Ye, Lei Wang, Xiaojun Li, Bilan |
author_sort | Ye, Lei |
collection | PubMed |
description | Epithelial-mesenchymal transition (EMT) is regulated by inducible factors, transcription factors, and a series of genes involved in diverse signaling pathways, which are correlated with tumor invasion and progression. In the present study, we analyzed the expression profile data of 1169 EMT-related genes in endometrial cancer (EC) from the Cancer Genome Atlas (TCGA) dataset, and performed consistency clustering to divide EC samples into two subgroups based on overall survival. The genes differentially expressed between the two subtypes included EMT-related genes. Univariate Cox analysis and least absolute shrinkage and selection operator (LASSO) were applied to construct a prognostic model based on the 44 genes signature. Five genes (L1CAM, PRKCI, ESR1, CDKN2A, and VIM) were finally included to establish a formula for prognostic risk score. The low-risk group showed significantly better prognosis compared with the high-risk group in the TCGA dataset. In addition, the risk-scoring model successfully predicted prognosis in an external GEO dataset (GSE102073). The relationship between ERα and vimentin levels was confirmed through immunohistochemistry. In conclusion, these data indicate that the expression profile of EMT-related genes could predict prognosis in EC. |
format | Online Article Text |
id | pubmed-8489121 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Ivyspring International Publisher |
record_format | MEDLINE/PubMed |
spelling | pubmed-84891212021-10-15 Expression profile of epithelial-mesenchymal transition-related genes as a prognostic biomarker for endometrial cancer Ye, Lei Wang, Xiaojun Li, Bilan J Cancer Research Paper Epithelial-mesenchymal transition (EMT) is regulated by inducible factors, transcription factors, and a series of genes involved in diverse signaling pathways, which are correlated with tumor invasion and progression. In the present study, we analyzed the expression profile data of 1169 EMT-related genes in endometrial cancer (EC) from the Cancer Genome Atlas (TCGA) dataset, and performed consistency clustering to divide EC samples into two subgroups based on overall survival. The genes differentially expressed between the two subtypes included EMT-related genes. Univariate Cox analysis and least absolute shrinkage and selection operator (LASSO) were applied to construct a prognostic model based on the 44 genes signature. Five genes (L1CAM, PRKCI, ESR1, CDKN2A, and VIM) were finally included to establish a formula for prognostic risk score. The low-risk group showed significantly better prognosis compared with the high-risk group in the TCGA dataset. In addition, the risk-scoring model successfully predicted prognosis in an external GEO dataset (GSE102073). The relationship between ERα and vimentin levels was confirmed through immunohistochemistry. In conclusion, these data indicate that the expression profile of EMT-related genes could predict prognosis in EC. Ivyspring International Publisher 2021-09-03 /pmc/articles/PMC8489121/ /pubmed/34659539 http://dx.doi.org/10.7150/jca.62729 Text en © The author(s) https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/). See http://ivyspring.com/terms for full terms and conditions. |
spellingShingle | Research Paper Ye, Lei Wang, Xiaojun Li, Bilan Expression profile of epithelial-mesenchymal transition-related genes as a prognostic biomarker for endometrial cancer |
title | Expression profile of epithelial-mesenchymal transition-related genes as a prognostic biomarker for endometrial cancer |
title_full | Expression profile of epithelial-mesenchymal transition-related genes as a prognostic biomarker for endometrial cancer |
title_fullStr | Expression profile of epithelial-mesenchymal transition-related genes as a prognostic biomarker for endometrial cancer |
title_full_unstemmed | Expression profile of epithelial-mesenchymal transition-related genes as a prognostic biomarker for endometrial cancer |
title_short | Expression profile of epithelial-mesenchymal transition-related genes as a prognostic biomarker for endometrial cancer |
title_sort | expression profile of epithelial-mesenchymal transition-related genes as a prognostic biomarker for endometrial cancer |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8489121/ https://www.ncbi.nlm.nih.gov/pubmed/34659539 http://dx.doi.org/10.7150/jca.62729 |
work_keys_str_mv | AT yelei expressionprofileofepithelialmesenchymaltransitionrelatedgenesasaprognosticbiomarkerforendometrialcancer AT wangxiaojun expressionprofileofepithelialmesenchymaltransitionrelatedgenesasaprognosticbiomarkerforendometrialcancer AT libilan expressionprofileofepithelialmesenchymaltransitionrelatedgenesasaprognosticbiomarkerforendometrialcancer |