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Expression profile of epithelial-mesenchymal transition-related genes as a prognostic biomarker for endometrial cancer

Epithelial-mesenchymal transition (EMT) is regulated by inducible factors, transcription factors, and a series of genes involved in diverse signaling pathways, which are correlated with tumor invasion and progression. In the present study, we analyzed the expression profile data of 1169 EMT-related...

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Detalles Bibliográficos
Autores principales: Ye, Lei, Wang, Xiaojun, Li, Bilan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Ivyspring International Publisher 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8489121/
https://www.ncbi.nlm.nih.gov/pubmed/34659539
http://dx.doi.org/10.7150/jca.62729
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author Ye, Lei
Wang, Xiaojun
Li, Bilan
author_facet Ye, Lei
Wang, Xiaojun
Li, Bilan
author_sort Ye, Lei
collection PubMed
description Epithelial-mesenchymal transition (EMT) is regulated by inducible factors, transcription factors, and a series of genes involved in diverse signaling pathways, which are correlated with tumor invasion and progression. In the present study, we analyzed the expression profile data of 1169 EMT-related genes in endometrial cancer (EC) from the Cancer Genome Atlas (TCGA) dataset, and performed consistency clustering to divide EC samples into two subgroups based on overall survival. The genes differentially expressed between the two subtypes included EMT-related genes. Univariate Cox analysis and least absolute shrinkage and selection operator (LASSO) were applied to construct a prognostic model based on the 44 genes signature. Five genes (L1CAM, PRKCI, ESR1, CDKN2A, and VIM) were finally included to establish a formula for prognostic risk score. The low-risk group showed significantly better prognosis compared with the high-risk group in the TCGA dataset. In addition, the risk-scoring model successfully predicted prognosis in an external GEO dataset (GSE102073). The relationship between ERα and vimentin levels was confirmed through immunohistochemistry. In conclusion, these data indicate that the expression profile of EMT-related genes could predict prognosis in EC.
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spelling pubmed-84891212021-10-15 Expression profile of epithelial-mesenchymal transition-related genes as a prognostic biomarker for endometrial cancer Ye, Lei Wang, Xiaojun Li, Bilan J Cancer Research Paper Epithelial-mesenchymal transition (EMT) is regulated by inducible factors, transcription factors, and a series of genes involved in diverse signaling pathways, which are correlated with tumor invasion and progression. In the present study, we analyzed the expression profile data of 1169 EMT-related genes in endometrial cancer (EC) from the Cancer Genome Atlas (TCGA) dataset, and performed consistency clustering to divide EC samples into two subgroups based on overall survival. The genes differentially expressed between the two subtypes included EMT-related genes. Univariate Cox analysis and least absolute shrinkage and selection operator (LASSO) were applied to construct a prognostic model based on the 44 genes signature. Five genes (L1CAM, PRKCI, ESR1, CDKN2A, and VIM) were finally included to establish a formula for prognostic risk score. The low-risk group showed significantly better prognosis compared with the high-risk group in the TCGA dataset. In addition, the risk-scoring model successfully predicted prognosis in an external GEO dataset (GSE102073). The relationship between ERα and vimentin levels was confirmed through immunohistochemistry. In conclusion, these data indicate that the expression profile of EMT-related genes could predict prognosis in EC. Ivyspring International Publisher 2021-09-03 /pmc/articles/PMC8489121/ /pubmed/34659539 http://dx.doi.org/10.7150/jca.62729 Text en © The author(s) https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/). See http://ivyspring.com/terms for full terms and conditions.
spellingShingle Research Paper
Ye, Lei
Wang, Xiaojun
Li, Bilan
Expression profile of epithelial-mesenchymal transition-related genes as a prognostic biomarker for endometrial cancer
title Expression profile of epithelial-mesenchymal transition-related genes as a prognostic biomarker for endometrial cancer
title_full Expression profile of epithelial-mesenchymal transition-related genes as a prognostic biomarker for endometrial cancer
title_fullStr Expression profile of epithelial-mesenchymal transition-related genes as a prognostic biomarker for endometrial cancer
title_full_unstemmed Expression profile of epithelial-mesenchymal transition-related genes as a prognostic biomarker for endometrial cancer
title_short Expression profile of epithelial-mesenchymal transition-related genes as a prognostic biomarker for endometrial cancer
title_sort expression profile of epithelial-mesenchymal transition-related genes as a prognostic biomarker for endometrial cancer
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8489121/
https://www.ncbi.nlm.nih.gov/pubmed/34659539
http://dx.doi.org/10.7150/jca.62729
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AT libilan expressionprofileofepithelialmesenchymaltransitionrelatedgenesasaprognosticbiomarkerforendometrialcancer