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Identification, expression, and functional analysis of Hsf and Hsp20 gene families in Brachypodium distachyon under heat stress

BACKGROUND: The heat shock factor (Hsf) and small heat shock protein (sHsp, also called Hsp20) complex has been identified as a primary component in the protection of plant cells from ubiquitous stresses, particularly heat stress. Our study aimed to characterize and analyze the Hsf and Hsp genes in...

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Autores principales: Li, Na, Jiang, Min, Li, Peng, Li, Xiwen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8489411/
https://www.ncbi.nlm.nih.gov/pubmed/34703676
http://dx.doi.org/10.7717/peerj.12267
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author Li, Na
Jiang, Min
Li, Peng
Li, Xiwen
author_facet Li, Na
Jiang, Min
Li, Peng
Li, Xiwen
author_sort Li, Na
collection PubMed
description BACKGROUND: The heat shock factor (Hsf) and small heat shock protein (sHsp, also called Hsp20) complex has been identified as a primary component in the protection of plant cells from ubiquitous stresses, particularly heat stress. Our study aimed to characterize and analyze the Hsf and Hsp genes in Brachypodium distachyon, an annual temperate grass and model plant in cereal and grass studies. RESULTS: We identified 24 Hsf and 18 Hsp20 genes in B. distachyon and explored their evolution in gene organization, sequence features, chromosomal localization, and gene duplication. Our phylogenetic analysis showed that BdHsfs could be divided into three categories and BdHsp20s into ten subfamilies. Further analysis showed that the 3’UTR length of BdHsp20 genes had a negative relationship with their expression under heat stress. Expression analyses indicated that BdHsp20s and BdHsfs were strongly and rapidly induced by high-temperature treatment. Additionally, we constructed a complex regulatory network based on their expression patterns under heat stress. Morphological analysis suggested that the overexpression of five BdHsp20 genes enhanced the seed germination rate and decreased cell death under high temperatures. CONCLUSION: Ultimately, our study provided important evolutionary and functional characterizations for future research on the regulatory mechanisms of BdHsp20s and BdHsfs in herbaceous plants under environmental stress.
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spelling pubmed-84894112021-10-25 Identification, expression, and functional analysis of Hsf and Hsp20 gene families in Brachypodium distachyon under heat stress Li, Na Jiang, Min Li, Peng Li, Xiwen PeerJ Bioinformatics BACKGROUND: The heat shock factor (Hsf) and small heat shock protein (sHsp, also called Hsp20) complex has been identified as a primary component in the protection of plant cells from ubiquitous stresses, particularly heat stress. Our study aimed to characterize and analyze the Hsf and Hsp genes in Brachypodium distachyon, an annual temperate grass and model plant in cereal and grass studies. RESULTS: We identified 24 Hsf and 18 Hsp20 genes in B. distachyon and explored their evolution in gene organization, sequence features, chromosomal localization, and gene duplication. Our phylogenetic analysis showed that BdHsfs could be divided into three categories and BdHsp20s into ten subfamilies. Further analysis showed that the 3’UTR length of BdHsp20 genes had a negative relationship with their expression under heat stress. Expression analyses indicated that BdHsp20s and BdHsfs were strongly and rapidly induced by high-temperature treatment. Additionally, we constructed a complex regulatory network based on their expression patterns under heat stress. Morphological analysis suggested that the overexpression of five BdHsp20 genes enhanced the seed germination rate and decreased cell death under high temperatures. CONCLUSION: Ultimately, our study provided important evolutionary and functional characterizations for future research on the regulatory mechanisms of BdHsp20s and BdHsfs in herbaceous plants under environmental stress. PeerJ Inc. 2021-10-01 /pmc/articles/PMC8489411/ /pubmed/34703676 http://dx.doi.org/10.7717/peerj.12267 Text en ©2021 Li et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.
spellingShingle Bioinformatics
Li, Na
Jiang, Min
Li, Peng
Li, Xiwen
Identification, expression, and functional analysis of Hsf and Hsp20 gene families in Brachypodium distachyon under heat stress
title Identification, expression, and functional analysis of Hsf and Hsp20 gene families in Brachypodium distachyon under heat stress
title_full Identification, expression, and functional analysis of Hsf and Hsp20 gene families in Brachypodium distachyon under heat stress
title_fullStr Identification, expression, and functional analysis of Hsf and Hsp20 gene families in Brachypodium distachyon under heat stress
title_full_unstemmed Identification, expression, and functional analysis of Hsf and Hsp20 gene families in Brachypodium distachyon under heat stress
title_short Identification, expression, and functional analysis of Hsf and Hsp20 gene families in Brachypodium distachyon under heat stress
title_sort identification, expression, and functional analysis of hsf and hsp20 gene families in brachypodium distachyon under heat stress
topic Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8489411/
https://www.ncbi.nlm.nih.gov/pubmed/34703676
http://dx.doi.org/10.7717/peerj.12267
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