Cargando…

Determination of the Near-Atomic Structure of Non-Purified Oligomeric E. coli Proteins

The roughly purified extract of E. coli proteins has been studied by cryoelectron microscopy, the class-sums containing 2D projections of two proteins (β-galactosidase and 2-oxoglutarate dehydrogenase complex catalytic domain (ODC-CD)), identified in an extract by tandem mass spectrometry, have been...

Descripción completa

Detalles Bibliográficos
Autores principales: Pichkur, E. B., Mikirtumov, V. I., Tikhonova, O. V., Derkacheva, N. I., Kurochkina, L. P., Sokolova, O. S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Pleiades Publishing 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8490847/
https://www.ncbi.nlm.nih.gov/pubmed/35173403
http://dx.doi.org/10.1134/S1063774521050187
_version_ 1784578610188779520
author Pichkur, E. B.
Mikirtumov, V. I.
Tikhonova, O. V.
Derkacheva, N. I.
Kurochkina, L. P.
Sokolova, O. S.
author_facet Pichkur, E. B.
Mikirtumov, V. I.
Tikhonova, O. V.
Derkacheva, N. I.
Kurochkina, L. P.
Sokolova, O. S.
author_sort Pichkur, E. B.
collection PubMed
description The roughly purified extract of E. coli proteins has been studied by cryoelectron microscopy, the class-sums containing 2D projections of two proteins (β-galactosidase and 2-oxoglutarate dehydrogenase complex catalytic domain (ODC-CD)), identified in an extract by tandem mass spectrometry, have been distinguished. The structures of these proteins have been solved at near-atomic resolution. De novo simulation of the ODC-CD structure yielded an atomic model that revealed differences in the positions of some amino acid residues of the active center, in comparison with the known crystal structures.
format Online
Article
Text
id pubmed-8490847
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Pleiades Publishing
record_format MEDLINE/PubMed
spelling pubmed-84908472021-10-05 Determination of the Near-Atomic Structure of Non-Purified Oligomeric E. coli Proteins Pichkur, E. B. Mikirtumov, V. I. Tikhonova, O. V. Derkacheva, N. I. Kurochkina, L. P. Sokolova, O. S. Crystallogr. Rep. Structure of Macromolecular Compounds The roughly purified extract of E. coli proteins has been studied by cryoelectron microscopy, the class-sums containing 2D projections of two proteins (β-galactosidase and 2-oxoglutarate dehydrogenase complex catalytic domain (ODC-CD)), identified in an extract by tandem mass spectrometry, have been distinguished. The structures of these proteins have been solved at near-atomic resolution. De novo simulation of the ODC-CD structure yielded an atomic model that revealed differences in the positions of some amino acid residues of the active center, in comparison with the known crystal structures. Pleiades Publishing 2021-10-05 2021 /pmc/articles/PMC8490847/ /pubmed/35173403 http://dx.doi.org/10.1134/S1063774521050187 Text en © Pleiades Publishing, Inc. 2021, ISSN 1063-7745, Crystallography Reports, 2021, Vol. 66, No. 5, pp. 854–860. © Pleiades Publishing, Inc., 2021.Russian Text © The Author(s), 2021, published in Kristallografiya, 2021, Vol. 66, No. 5, pp. 829–835. This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Structure of Macromolecular Compounds
Pichkur, E. B.
Mikirtumov, V. I.
Tikhonova, O. V.
Derkacheva, N. I.
Kurochkina, L. P.
Sokolova, O. S.
Determination of the Near-Atomic Structure of Non-Purified Oligomeric E. coli Proteins
title Determination of the Near-Atomic Structure of Non-Purified Oligomeric E. coli Proteins
title_full Determination of the Near-Atomic Structure of Non-Purified Oligomeric E. coli Proteins
title_fullStr Determination of the Near-Atomic Structure of Non-Purified Oligomeric E. coli Proteins
title_full_unstemmed Determination of the Near-Atomic Structure of Non-Purified Oligomeric E. coli Proteins
title_short Determination of the Near-Atomic Structure of Non-Purified Oligomeric E. coli Proteins
title_sort determination of the near-atomic structure of non-purified oligomeric e. coli proteins
topic Structure of Macromolecular Compounds
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8490847/
https://www.ncbi.nlm.nih.gov/pubmed/35173403
http://dx.doi.org/10.1134/S1063774521050187
work_keys_str_mv AT pichkureb determinationofthenearatomicstructureofnonpurifiedoligomericecoliproteins
AT mikirtumovvi determinationofthenearatomicstructureofnonpurifiedoligomericecoliproteins
AT tikhonovaov determinationofthenearatomicstructureofnonpurifiedoligomericecoliproteins
AT derkachevani determinationofthenearatomicstructureofnonpurifiedoligomericecoliproteins
AT kurochkinalp determinationofthenearatomicstructureofnonpurifiedoligomericecoliproteins
AT sokolovaos determinationofthenearatomicstructureofnonpurifiedoligomericecoliproteins