Characterization of the complete chloroplast genome sequence of Rubus rufus Focke (Rosaceae)

Rubus rufus Focke is a deciduous shrub species native to subtropical China and is valuable resources for the Raspberry cultivation by virtue of prolific fruits and stout resistances to hash stress. In this study, we assembled and characterized the complete chloroplast genome of R. rufus as resources...

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Autores principales: Huang, Weicheng, Qiao, Fei, Guo, Wei, Wu, Wei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8491697/
https://www.ncbi.nlm.nih.gov/pubmed/34621984
http://dx.doi.org/10.1080/23802359.2021.1967810
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author Huang, Weicheng
Qiao, Fei
Guo, Wei
Wu, Wei
author_facet Huang, Weicheng
Qiao, Fei
Guo, Wei
Wu, Wei
author_sort Huang, Weicheng
collection PubMed
description Rubus rufus Focke is a deciduous shrub species native to subtropical China and is valuable resources for the Raspberry cultivation by virtue of prolific fruits and stout resistances to hash stress. In this study, we assembled and characterized the complete chloroplast genome of R. rufus as resources for the future study. The chloroplast genome was 156,232 bp in length, composing of one large single copy (LSC; 85,840 bp) and one small single copy (SSC; 18,850 bp), separated by two inverted repeats (IRs; 25,771 bp). A total of 130 genes were predicted, including eight rRNAs, 36 tRNAs, and 86 protein-coding genes. The phylogenetic analysis showed a close relationship between R. rufus and Rubus cochinchinensis in the tribe Rubeae.
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spelling pubmed-84916972021-10-06 Characterization of the complete chloroplast genome sequence of Rubus rufus Focke (Rosaceae) Huang, Weicheng Qiao, Fei Guo, Wei Wu, Wei Mitochondrial DNA B Resour Mitogenome Announcement Rubus rufus Focke is a deciduous shrub species native to subtropical China and is valuable resources for the Raspberry cultivation by virtue of prolific fruits and stout resistances to hash stress. In this study, we assembled and characterized the complete chloroplast genome of R. rufus as resources for the future study. The chloroplast genome was 156,232 bp in length, composing of one large single copy (LSC; 85,840 bp) and one small single copy (SSC; 18,850 bp), separated by two inverted repeats (IRs; 25,771 bp). A total of 130 genes were predicted, including eight rRNAs, 36 tRNAs, and 86 protein-coding genes. The phylogenetic analysis showed a close relationship between R. rufus and Rubus cochinchinensis in the tribe Rubeae. Taylor & Francis 2021-09-30 /pmc/articles/PMC8491697/ /pubmed/34621984 http://dx.doi.org/10.1080/23802359.2021.1967810 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Huang, Weicheng
Qiao, Fei
Guo, Wei
Wu, Wei
Characterization of the complete chloroplast genome sequence of Rubus rufus Focke (Rosaceae)
title Characterization of the complete chloroplast genome sequence of Rubus rufus Focke (Rosaceae)
title_full Characterization of the complete chloroplast genome sequence of Rubus rufus Focke (Rosaceae)
title_fullStr Characterization of the complete chloroplast genome sequence of Rubus rufus Focke (Rosaceae)
title_full_unstemmed Characterization of the complete chloroplast genome sequence of Rubus rufus Focke (Rosaceae)
title_short Characterization of the complete chloroplast genome sequence of Rubus rufus Focke (Rosaceae)
title_sort characterization of the complete chloroplast genome sequence of rubus rufus focke (rosaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8491697/
https://www.ncbi.nlm.nih.gov/pubmed/34621984
http://dx.doi.org/10.1080/23802359.2021.1967810
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