The complete chloroplast genome sequence of the Cucurbita ficifolia Bouché (Cucurbitaceae)

Cucurbita ficifolia Bouché is an important germplasm resource used for rootstock and hypoglycemic food in Cucurbitaceae. The complete chloroplast genome sequence of C. ficifolia has been determined in this study. The total genome size is 157,533 bp in length and contains a pair of inverted repeats (...

Descripción completa

Detalles Bibliográficos
Autores principales: Cong, Zhou, Cai, Lijuan, Zhang, Yu, Su, Wenzhen, Li, Huiying, Zhu, Qianglong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8491698/
https://www.ncbi.nlm.nih.gov/pubmed/34621985
http://dx.doi.org/10.1080/23802359.2021.1981171
_version_ 1784578777220644864
author Cong, Zhou
Cai, Lijuan
Zhang, Yu
Su, Wenzhen
Li, Huiying
Zhu, Qianglong
author_facet Cong, Zhou
Cai, Lijuan
Zhang, Yu
Su, Wenzhen
Li, Huiying
Zhu, Qianglong
author_sort Cong, Zhou
collection PubMed
description Cucurbita ficifolia Bouché is an important germplasm resource used for rootstock and hypoglycemic food in Cucurbitaceae. The complete chloroplast genome sequence of C. ficifolia has been determined in this study. The total genome size is 157,533 bp in length and contains a pair of inverted repeats (IRs) of 25,639 bp, which were separated by large single copy (LSC) and small single copy (SSC) of 88,112 bp and 18,143 bp, respectively. A total of 130 genes were predicted including 86 protein-coding genes, eight rRNA genes and 36 tRNA genes. Further, Maximum-likelihood phylogenetic analysis revealed that C. ficifolia is a base clade of genus Cucurbita and closer to Cucurbita maxima. The chloroplast genome of C. ficifolia would promote the germplasm exploration, phylogenetic relationships, and molecular biology researches in Cucurbita.
format Online
Article
Text
id pubmed-8491698
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-84916982021-10-06 The complete chloroplast genome sequence of the Cucurbita ficifolia Bouché (Cucurbitaceae) Cong, Zhou Cai, Lijuan Zhang, Yu Su, Wenzhen Li, Huiying Zhu, Qianglong Mitochondrial DNA B Resour Mitogenome Announcement Cucurbita ficifolia Bouché is an important germplasm resource used for rootstock and hypoglycemic food in Cucurbitaceae. The complete chloroplast genome sequence of C. ficifolia has been determined in this study. The total genome size is 157,533 bp in length and contains a pair of inverted repeats (IRs) of 25,639 bp, which were separated by large single copy (LSC) and small single copy (SSC) of 88,112 bp and 18,143 bp, respectively. A total of 130 genes were predicted including 86 protein-coding genes, eight rRNA genes and 36 tRNA genes. Further, Maximum-likelihood phylogenetic analysis revealed that C. ficifolia is a base clade of genus Cucurbita and closer to Cucurbita maxima. The chloroplast genome of C. ficifolia would promote the germplasm exploration, phylogenetic relationships, and molecular biology researches in Cucurbita. Taylor & Francis 2021-09-30 /pmc/articles/PMC8491698/ /pubmed/34621985 http://dx.doi.org/10.1080/23802359.2021.1981171 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Cong, Zhou
Cai, Lijuan
Zhang, Yu
Su, Wenzhen
Li, Huiying
Zhu, Qianglong
The complete chloroplast genome sequence of the Cucurbita ficifolia Bouché (Cucurbitaceae)
title The complete chloroplast genome sequence of the Cucurbita ficifolia Bouché (Cucurbitaceae)
title_full The complete chloroplast genome sequence of the Cucurbita ficifolia Bouché (Cucurbitaceae)
title_fullStr The complete chloroplast genome sequence of the Cucurbita ficifolia Bouché (Cucurbitaceae)
title_full_unstemmed The complete chloroplast genome sequence of the Cucurbita ficifolia Bouché (Cucurbitaceae)
title_short The complete chloroplast genome sequence of the Cucurbita ficifolia Bouché (Cucurbitaceae)
title_sort complete chloroplast genome sequence of the cucurbita ficifolia bouché (cucurbitaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8491698/
https://www.ncbi.nlm.nih.gov/pubmed/34621985
http://dx.doi.org/10.1080/23802359.2021.1981171
work_keys_str_mv AT congzhou thecompletechloroplastgenomesequenceofthecucurbitaficifoliabouchecucurbitaceae
AT cailijuan thecompletechloroplastgenomesequenceofthecucurbitaficifoliabouchecucurbitaceae
AT zhangyu thecompletechloroplastgenomesequenceofthecucurbitaficifoliabouchecucurbitaceae
AT suwenzhen thecompletechloroplastgenomesequenceofthecucurbitaficifoliabouchecucurbitaceae
AT lihuiying thecompletechloroplastgenomesequenceofthecucurbitaficifoliabouchecucurbitaceae
AT zhuqianglong thecompletechloroplastgenomesequenceofthecucurbitaficifoliabouchecucurbitaceae
AT congzhou completechloroplastgenomesequenceofthecucurbitaficifoliabouchecucurbitaceae
AT cailijuan completechloroplastgenomesequenceofthecucurbitaficifoliabouchecucurbitaceae
AT zhangyu completechloroplastgenomesequenceofthecucurbitaficifoliabouchecucurbitaceae
AT suwenzhen completechloroplastgenomesequenceofthecucurbitaficifoliabouchecucurbitaceae
AT lihuiying completechloroplastgenomesequenceofthecucurbitaficifoliabouchecucurbitaceae
AT zhuqianglong completechloroplastgenomesequenceofthecucurbitaficifoliabouchecucurbitaceae

Ejemplares similares