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The complete chloroplast genome of Echinochloa haploclada

The genus Echinochloa (Poaceae) includes orphan crops and important agricultural weeds. Here, we assembled the complete chloroplast genome of a diploid Echinochloa species (E. haploclada). The chloroplast genome is 139,844 bp in length, which includes a large single copy region (81,893 bp), a small...

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Autores principales: Jiang, Bowen, Lao, Sangting, Wu, Dongya, Fan, Longjiang, Ye, Chu-Yu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8491716/
https://www.ncbi.nlm.nih.gov/pubmed/34621989
http://dx.doi.org/10.1080/23802359.2021.1982654
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author Jiang, Bowen
Lao, Sangting
Wu, Dongya
Fan, Longjiang
Ye, Chu-Yu
author_facet Jiang, Bowen
Lao, Sangting
Wu, Dongya
Fan, Longjiang
Ye, Chu-Yu
author_sort Jiang, Bowen
collection PubMed
description The genus Echinochloa (Poaceae) includes orphan crops and important agricultural weeds. Here, we assembled the complete chloroplast genome of a diploid Echinochloa species (E. haploclada). The chloroplast genome is 139,844 bp in length, which includes a large single copy region (81,893 bp), a small single copy region (12,533 bp) and two separated inverted repeat regions (45,418 bp). A total of 119 unique genes were annotated, consisting of 83 protein-coding genes, 32 tRNA genes and 4 rRNA genes. Hexaploid E. crus-galli, one of the most serious weeds worldwide, was derived from a hybrid between tetraploid E. oryzicola and an unknown diploid species. Based on chloroplast genomes of eight Echinochloa species (varieties), the phylogenetic analysis showed that E. crus-galli clustered firstly with diploid E. haploclada rather than tetraploid E. oryzicola, supporting previous assumption that E. oryzicola is the paternal donor of E. crus-galli.
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spelling pubmed-84917162021-10-06 The complete chloroplast genome of Echinochloa haploclada Jiang, Bowen Lao, Sangting Wu, Dongya Fan, Longjiang Ye, Chu-Yu Mitochondrial DNA B Resour Mitogenome Announcement The genus Echinochloa (Poaceae) includes orphan crops and important agricultural weeds. Here, we assembled the complete chloroplast genome of a diploid Echinochloa species (E. haploclada). The chloroplast genome is 139,844 bp in length, which includes a large single copy region (81,893 bp), a small single copy region (12,533 bp) and two separated inverted repeat regions (45,418 bp). A total of 119 unique genes were annotated, consisting of 83 protein-coding genes, 32 tRNA genes and 4 rRNA genes. Hexaploid E. crus-galli, one of the most serious weeds worldwide, was derived from a hybrid between tetraploid E. oryzicola and an unknown diploid species. Based on chloroplast genomes of eight Echinochloa species (varieties), the phylogenetic analysis showed that E. crus-galli clustered firstly with diploid E. haploclada rather than tetraploid E. oryzicola, supporting previous assumption that E. oryzicola is the paternal donor of E. crus-galli. Taylor & Francis 2021-09-30 /pmc/articles/PMC8491716/ /pubmed/34621989 http://dx.doi.org/10.1080/23802359.2021.1982654 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Jiang, Bowen
Lao, Sangting
Wu, Dongya
Fan, Longjiang
Ye, Chu-Yu
The complete chloroplast genome of Echinochloa haploclada
title The complete chloroplast genome of Echinochloa haploclada
title_full The complete chloroplast genome of Echinochloa haploclada
title_fullStr The complete chloroplast genome of Echinochloa haploclada
title_full_unstemmed The complete chloroplast genome of Echinochloa haploclada
title_short The complete chloroplast genome of Echinochloa haploclada
title_sort complete chloroplast genome of echinochloa haploclada
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8491716/
https://www.ncbi.nlm.nih.gov/pubmed/34621989
http://dx.doi.org/10.1080/23802359.2021.1982654
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