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Construction of a Prognostic Model in Lung Adenocarcinoma Based on Ferroptosis-Related Genes
Background: Lung adenocarcinoma is one of the most common malignant tumors of the respiratory system, ranking first in morbidity and mortality among all cancers. This study aims to establish a ferroptosis-related gene-based prognostic model to investigate the potential prognosis of lung adenocarcino...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8493116/ https://www.ncbi.nlm.nih.gov/pubmed/34630529 http://dx.doi.org/10.3389/fgene.2021.739520 |
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author | Liang, Min Chen, Mafeng Zhong, Yinghua Singh, Shivank Singh, Shantanu |
author_facet | Liang, Min Chen, Mafeng Zhong, Yinghua Singh, Shivank Singh, Shantanu |
author_sort | Liang, Min |
collection | PubMed |
description | Background: Lung adenocarcinoma is one of the most common malignant tumors of the respiratory system, ranking first in morbidity and mortality among all cancers. This study aims to establish a ferroptosis-related gene-based prognostic model to investigate the potential prognosis of lung adenocarcinoma. Methods: We obtained gene expression data with matching clinical data of lung adenocarcinoma from the The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) databases. The ferroptosis-related genes (FRGs) were downloaded from three subgroups in the ferroptosis database. Using gene expression differential analysis, univariate Cox regression, and LASSO regression analysis, seven FRGs with prognostic significance were identified. The result of multivariate Cox analysis was utilized to calculate regression coefficients and establish a risk-score formula that divided patients with lung adenocarcinoma into high-risk and low-risk groups. The TCGA results were validated using GEO data sets. Then we observed that patients divided in the low-risk group lived longer than the overall survival (OS) of the other. Then we developed a novel nomogram including age, gender, clinical stage, TNM stage, and risk score. Results: The areas under the curves (AUCs) for 3- and 5-years OS predicted by the model were 0.823 and 0.852, respectively. Calibration plots and decision curve analysis also confirmed the excellent predictive performance of the model. Subsequently, gene function enrichment analysis revealed that the identified FRGs are important in DNA replication, cell cycle regulation, cell adhesion, chromosomal mutation, oxidative phosphorylation, P53 signaling pathway, and proteasome processes. Conclusions: Our results verified the prognostic significance of FRGs in patients with lung adenocarcinoma, which may regulate tumor progression in a variety of pathways. |
format | Online Article Text |
id | pubmed-8493116 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-84931162021-10-07 Construction of a Prognostic Model in Lung Adenocarcinoma Based on Ferroptosis-Related Genes Liang, Min Chen, Mafeng Zhong, Yinghua Singh, Shivank Singh, Shantanu Front Genet Genetics Background: Lung adenocarcinoma is one of the most common malignant tumors of the respiratory system, ranking first in morbidity and mortality among all cancers. This study aims to establish a ferroptosis-related gene-based prognostic model to investigate the potential prognosis of lung adenocarcinoma. Methods: We obtained gene expression data with matching clinical data of lung adenocarcinoma from the The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) databases. The ferroptosis-related genes (FRGs) were downloaded from three subgroups in the ferroptosis database. Using gene expression differential analysis, univariate Cox regression, and LASSO regression analysis, seven FRGs with prognostic significance were identified. The result of multivariate Cox analysis was utilized to calculate regression coefficients and establish a risk-score formula that divided patients with lung adenocarcinoma into high-risk and low-risk groups. The TCGA results were validated using GEO data sets. Then we observed that patients divided in the low-risk group lived longer than the overall survival (OS) of the other. Then we developed a novel nomogram including age, gender, clinical stage, TNM stage, and risk score. Results: The areas under the curves (AUCs) for 3- and 5-years OS predicted by the model were 0.823 and 0.852, respectively. Calibration plots and decision curve analysis also confirmed the excellent predictive performance of the model. Subsequently, gene function enrichment analysis revealed that the identified FRGs are important in DNA replication, cell cycle regulation, cell adhesion, chromosomal mutation, oxidative phosphorylation, P53 signaling pathway, and proteasome processes. Conclusions: Our results verified the prognostic significance of FRGs in patients with lung adenocarcinoma, which may regulate tumor progression in a variety of pathways. Frontiers Media S.A. 2021-09-22 /pmc/articles/PMC8493116/ /pubmed/34630529 http://dx.doi.org/10.3389/fgene.2021.739520 Text en Copyright © 2021 Liang, Chen, Zhong, Singh and Singh. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Liang, Min Chen, Mafeng Zhong, Yinghua Singh, Shivank Singh, Shantanu Construction of a Prognostic Model in Lung Adenocarcinoma Based on Ferroptosis-Related Genes |
title | Construction of a Prognostic Model in Lung Adenocarcinoma Based on Ferroptosis-Related Genes |
title_full | Construction of a Prognostic Model in Lung Adenocarcinoma Based on Ferroptosis-Related Genes |
title_fullStr | Construction of a Prognostic Model in Lung Adenocarcinoma Based on Ferroptosis-Related Genes |
title_full_unstemmed | Construction of a Prognostic Model in Lung Adenocarcinoma Based on Ferroptosis-Related Genes |
title_short | Construction of a Prognostic Model in Lung Adenocarcinoma Based on Ferroptosis-Related Genes |
title_sort | construction of a prognostic model in lung adenocarcinoma based on ferroptosis-related genes |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8493116/ https://www.ncbi.nlm.nih.gov/pubmed/34630529 http://dx.doi.org/10.3389/fgene.2021.739520 |
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