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POD-Enhanced Deep Learning-Based Reduced Order Models for the Real-Time Simulation of Cardiac Electrophysiology in the Left Atrium
The numerical simulation of multiple scenarios easily becomes computationally prohibitive for cardiac electrophysiology (EP) problems if relying on usual high-fidelity, full order models (FOMs). Likewise, the use of traditional reduced order models (ROMs) for parametrized PDEs to speed up the soluti...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8493298/ https://www.ncbi.nlm.nih.gov/pubmed/34630131 http://dx.doi.org/10.3389/fphys.2021.679076 |
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author | Fresca, Stefania Manzoni, Andrea Dedè, Luca Quarteroni, Alfio |
author_facet | Fresca, Stefania Manzoni, Andrea Dedè, Luca Quarteroni, Alfio |
author_sort | Fresca, Stefania |
collection | PubMed |
description | The numerical simulation of multiple scenarios easily becomes computationally prohibitive for cardiac electrophysiology (EP) problems if relying on usual high-fidelity, full order models (FOMs). Likewise, the use of traditional reduced order models (ROMs) for parametrized PDEs to speed up the solution of the aforementioned problems can be problematic. This is primarily due to the strong variability characterizing the solution set and to the nonlinear nature of the input-output maps that we intend to reconstruct numerically. To enhance ROM efficiency, we proposed a new generation of non-intrusive, nonlinear ROMs, based on deep learning (DL) algorithms, such as convolutional, feedforward, and autoencoder neural networks. In the proposed DL-ROM, both the nonlinear solution manifold and the nonlinear reduced dynamics used to model the system evolution on that manifold can be learnt in a non-intrusive way thanks to DL algorithms trained on a set of FOM snapshots. DL-ROMs were shown to be able to accurately capture complex front propagation processes, both in physiological and pathological cardiac EP, very rapidly once neural networks were trained, however, at the expense of huge training costs. In this study, we show that performing a prior dimensionality reduction on FOM snapshots through randomized proper orthogonal decomposition (POD) enables to speed up training times and to decrease networks complexity. Accuracy and efficiency of this strategy, which we refer to as POD-DL-ROM, are assessed in the context of cardiac EP on an idealized left atrium (LA) geometry and considering snapshots arising from a NURBS (non-uniform rational B-splines)-based isogeometric analysis (IGA) discretization. Once the ROMs have been trained, POD-DL-ROMs can efficiently solve both physiological and pathological cardiac EP problems, for any new scenario, in real-time, even in extremely challenging contexts such as those featuring circuit re-entries, that are among the factors triggering cardiac arrhythmias. |
format | Online Article Text |
id | pubmed-8493298 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-84932982021-10-07 POD-Enhanced Deep Learning-Based Reduced Order Models for the Real-Time Simulation of Cardiac Electrophysiology in the Left Atrium Fresca, Stefania Manzoni, Andrea Dedè, Luca Quarteroni, Alfio Front Physiol Physiology The numerical simulation of multiple scenarios easily becomes computationally prohibitive for cardiac electrophysiology (EP) problems if relying on usual high-fidelity, full order models (FOMs). Likewise, the use of traditional reduced order models (ROMs) for parametrized PDEs to speed up the solution of the aforementioned problems can be problematic. This is primarily due to the strong variability characterizing the solution set and to the nonlinear nature of the input-output maps that we intend to reconstruct numerically. To enhance ROM efficiency, we proposed a new generation of non-intrusive, nonlinear ROMs, based on deep learning (DL) algorithms, such as convolutional, feedforward, and autoencoder neural networks. In the proposed DL-ROM, both the nonlinear solution manifold and the nonlinear reduced dynamics used to model the system evolution on that manifold can be learnt in a non-intrusive way thanks to DL algorithms trained on a set of FOM snapshots. DL-ROMs were shown to be able to accurately capture complex front propagation processes, both in physiological and pathological cardiac EP, very rapidly once neural networks were trained, however, at the expense of huge training costs. In this study, we show that performing a prior dimensionality reduction on FOM snapshots through randomized proper orthogonal decomposition (POD) enables to speed up training times and to decrease networks complexity. Accuracy and efficiency of this strategy, which we refer to as POD-DL-ROM, are assessed in the context of cardiac EP on an idealized left atrium (LA) geometry and considering snapshots arising from a NURBS (non-uniform rational B-splines)-based isogeometric analysis (IGA) discretization. Once the ROMs have been trained, POD-DL-ROMs can efficiently solve both physiological and pathological cardiac EP problems, for any new scenario, in real-time, even in extremely challenging contexts such as those featuring circuit re-entries, that are among the factors triggering cardiac arrhythmias. Frontiers Media S.A. 2021-09-22 /pmc/articles/PMC8493298/ /pubmed/34630131 http://dx.doi.org/10.3389/fphys.2021.679076 Text en Copyright © 2021 Fresca, Manzoni, Dedè and Quarteroni. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Physiology Fresca, Stefania Manzoni, Andrea Dedè, Luca Quarteroni, Alfio POD-Enhanced Deep Learning-Based Reduced Order Models for the Real-Time Simulation of Cardiac Electrophysiology in the Left Atrium |
title | POD-Enhanced Deep Learning-Based Reduced Order Models for the Real-Time Simulation of Cardiac Electrophysiology in the Left Atrium |
title_full | POD-Enhanced Deep Learning-Based Reduced Order Models for the Real-Time Simulation of Cardiac Electrophysiology in the Left Atrium |
title_fullStr | POD-Enhanced Deep Learning-Based Reduced Order Models for the Real-Time Simulation of Cardiac Electrophysiology in the Left Atrium |
title_full_unstemmed | POD-Enhanced Deep Learning-Based Reduced Order Models for the Real-Time Simulation of Cardiac Electrophysiology in the Left Atrium |
title_short | POD-Enhanced Deep Learning-Based Reduced Order Models for the Real-Time Simulation of Cardiac Electrophysiology in the Left Atrium |
title_sort | pod-enhanced deep learning-based reduced order models for the real-time simulation of cardiac electrophysiology in the left atrium |
topic | Physiology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8493298/ https://www.ncbi.nlm.nih.gov/pubmed/34630131 http://dx.doi.org/10.3389/fphys.2021.679076 |
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