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The bayberry database: a multiomic database for Myrica rubra, an important fruit tree with medicinal value
BACKGROUND: Chinese bayberry (Myrica rubra Sieb. & Zucc.) is an important fruit tree in China, and has high medicinal value. At present, the genome, transcriptome and germplasm resources of bayberry have been reported. In order to make more convenient use of these data, the Bayberry Database was...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8493685/ https://www.ncbi.nlm.nih.gov/pubmed/34615485 http://dx.doi.org/10.1186/s12870-021-03232-x |
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author | Ren, Haiying He, Yuanhao Qi, Xingjiang Zheng, Xiliang Zhang, Shuwen Yu, Zheping Hu, Fengrong |
author_facet | Ren, Haiying He, Yuanhao Qi, Xingjiang Zheng, Xiliang Zhang, Shuwen Yu, Zheping Hu, Fengrong |
author_sort | Ren, Haiying |
collection | PubMed |
description | BACKGROUND: Chinese bayberry (Myrica rubra Sieb. & Zucc.) is an important fruit tree in China, and has high medicinal value. At present, the genome, transcriptome and germplasm resources of bayberry have been reported. In order to make more convenient use of these data, the Bayberry Database was established. RESULTS: The Bayberry Database is a comprehensive and intuitive data platform for examining the diverse annotated genome and germplasm resources of this species. This database contains nine central functional domains to interact with multiomic data: home, genome, germplasm, markers, tools, map, expression, reference, and contact. All domains provide pathways to a variety of data types composed of a reference genome sequence, transcriptomic data, gene patterns, phenotypic data, fruit images of Myrica rubra varieties, gSSR data, gene maps with annotation and evolutionary analyses. The tools module includes BLAST search, keyword search, sequence fetch and enrichment analysis functions. CONCLUSIONS: The web address of the database is as follows http://www.bayberrybase.cn/. The Myrica rubra database is an intelligent, interactive, and user-friendly system that enables researchers, breeders and horticultural personnel to browse, search and retrieve relevant and useful information and thus facilitate genomic research and breeding efforts concerning Myrica rubra. This database will be of great help to bayberry research and breeding in the future. |
format | Online Article Text |
id | pubmed-8493685 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-84936852021-10-06 The bayberry database: a multiomic database for Myrica rubra, an important fruit tree with medicinal value Ren, Haiying He, Yuanhao Qi, Xingjiang Zheng, Xiliang Zhang, Shuwen Yu, Zheping Hu, Fengrong BMC Plant Biol Database BACKGROUND: Chinese bayberry (Myrica rubra Sieb. & Zucc.) is an important fruit tree in China, and has high medicinal value. At present, the genome, transcriptome and germplasm resources of bayberry have been reported. In order to make more convenient use of these data, the Bayberry Database was established. RESULTS: The Bayberry Database is a comprehensive and intuitive data platform for examining the diverse annotated genome and germplasm resources of this species. This database contains nine central functional domains to interact with multiomic data: home, genome, germplasm, markers, tools, map, expression, reference, and contact. All domains provide pathways to a variety of data types composed of a reference genome sequence, transcriptomic data, gene patterns, phenotypic data, fruit images of Myrica rubra varieties, gSSR data, gene maps with annotation and evolutionary analyses. The tools module includes BLAST search, keyword search, sequence fetch and enrichment analysis functions. CONCLUSIONS: The web address of the database is as follows http://www.bayberrybase.cn/. The Myrica rubra database is an intelligent, interactive, and user-friendly system that enables researchers, breeders and horticultural personnel to browse, search and retrieve relevant and useful information and thus facilitate genomic research and breeding efforts concerning Myrica rubra. This database will be of great help to bayberry research and breeding in the future. BioMed Central 2021-10-06 /pmc/articles/PMC8493685/ /pubmed/34615485 http://dx.doi.org/10.1186/s12870-021-03232-x Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Database Ren, Haiying He, Yuanhao Qi, Xingjiang Zheng, Xiliang Zhang, Shuwen Yu, Zheping Hu, Fengrong The bayberry database: a multiomic database for Myrica rubra, an important fruit tree with medicinal value |
title | The bayberry database: a multiomic database for Myrica rubra, an important fruit tree with medicinal value |
title_full | The bayberry database: a multiomic database for Myrica rubra, an important fruit tree with medicinal value |
title_fullStr | The bayberry database: a multiomic database for Myrica rubra, an important fruit tree with medicinal value |
title_full_unstemmed | The bayberry database: a multiomic database for Myrica rubra, an important fruit tree with medicinal value |
title_short | The bayberry database: a multiomic database for Myrica rubra, an important fruit tree with medicinal value |
title_sort | bayberry database: a multiomic database for myrica rubra, an important fruit tree with medicinal value |
topic | Database |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8493685/ https://www.ncbi.nlm.nih.gov/pubmed/34615485 http://dx.doi.org/10.1186/s12870-021-03232-x |
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