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Co-clustering of Time-Dependent Data via the Shape Invariant Model
Multivariate time-dependent data, where multiple features are observed over time for a set of individuals, are increasingly widespread in many application domains. To model these data, we need to account for relations among both time instants and variables and, at the same time, for subject heteroge...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer US
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8494170/ https://www.ncbi.nlm.nih.gov/pubmed/34642517 http://dx.doi.org/10.1007/s00357-021-09402-8 |
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author | Casa, Alessandro Bouveyron, Charles Erosheva, Elena Menardi, Giovanna |
author_facet | Casa, Alessandro Bouveyron, Charles Erosheva, Elena Menardi, Giovanna |
author_sort | Casa, Alessandro |
collection | PubMed |
description | Multivariate time-dependent data, where multiple features are observed over time for a set of individuals, are increasingly widespread in many application domains. To model these data, we need to account for relations among both time instants and variables and, at the same time, for subject heterogeneity. We propose a new co-clustering methodology for grouping individuals and variables simultaneously, designed to handle both functional and longitudinal data. Our approach borrows some concepts from the curve registration framework by embedding the shape invariant model in the latent block model, estimated via a suitable modification of the SEM-Gibbs algorithm. The resulting procedure allows for several user-defined specifications of the notion of cluster that can be chosen on substantive grounds and provides parsimonious summaries of complex time-dependent data by partitioning data matrices into homogeneous blocks. Along with the explicit modelling of time evolution, these aspects allow for an easy interpretation of the clusters, from which also low-dimensional settings may benefit. |
format | Online Article Text |
id | pubmed-8494170 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Springer US |
record_format | MEDLINE/PubMed |
spelling | pubmed-84941702021-10-08 Co-clustering of Time-Dependent Data via the Shape Invariant Model Casa, Alessandro Bouveyron, Charles Erosheva, Elena Menardi, Giovanna J Classif Article Multivariate time-dependent data, where multiple features are observed over time for a set of individuals, are increasingly widespread in many application domains. To model these data, we need to account for relations among both time instants and variables and, at the same time, for subject heterogeneity. We propose a new co-clustering methodology for grouping individuals and variables simultaneously, designed to handle both functional and longitudinal data. Our approach borrows some concepts from the curve registration framework by embedding the shape invariant model in the latent block model, estimated via a suitable modification of the SEM-Gibbs algorithm. The resulting procedure allows for several user-defined specifications of the notion of cluster that can be chosen on substantive grounds and provides parsimonious summaries of complex time-dependent data by partitioning data matrices into homogeneous blocks. Along with the explicit modelling of time evolution, these aspects allow for an easy interpretation of the clusters, from which also low-dimensional settings may benefit. Springer US 2021-10-06 2021 /pmc/articles/PMC8494170/ /pubmed/34642517 http://dx.doi.org/10.1007/s00357-021-09402-8 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Casa, Alessandro Bouveyron, Charles Erosheva, Elena Menardi, Giovanna Co-clustering of Time-Dependent Data via the Shape Invariant Model |
title | Co-clustering of Time-Dependent Data via the Shape Invariant Model |
title_full | Co-clustering of Time-Dependent Data via the Shape Invariant Model |
title_fullStr | Co-clustering of Time-Dependent Data via the Shape Invariant Model |
title_full_unstemmed | Co-clustering of Time-Dependent Data via the Shape Invariant Model |
title_short | Co-clustering of Time-Dependent Data via the Shape Invariant Model |
title_sort | co-clustering of time-dependent data via the shape invariant model |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8494170/ https://www.ncbi.nlm.nih.gov/pubmed/34642517 http://dx.doi.org/10.1007/s00357-021-09402-8 |
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