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A GTP-synthesizing ribozyme selected by metabolic coupling to an RNA polymerase ribozyme

Synthesis of RNA in early life forms required chemically activated nucleotides, perhaps in the same form of nucleoside 5′-triphosphates (NTPs) as in the contemporary biosphere. We show the development of a catalytic RNA (ribozyme) that generates the nucleoside triphosphate guanosine 5′-triphosphate...

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Autores principales: Akoopie, Arvin, Arriola, Joshua T., Magde, Douglas, Müller, Ulrich F.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Association for the Advancement of Science 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8494290/
https://www.ncbi.nlm.nih.gov/pubmed/34613767
http://dx.doi.org/10.1126/sciadv.abj7487
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author Akoopie, Arvin
Arriola, Joshua T.
Magde, Douglas
Müller, Ulrich F.
author_facet Akoopie, Arvin
Arriola, Joshua T.
Magde, Douglas
Müller, Ulrich F.
author_sort Akoopie, Arvin
collection PubMed
description Synthesis of RNA in early life forms required chemically activated nucleotides, perhaps in the same form of nucleoside 5′-triphosphates (NTPs) as in the contemporary biosphere. We show the development of a catalytic RNA (ribozyme) that generates the nucleoside triphosphate guanosine 5′-triphosphate (GTP) from the nucleoside guanosine and the prebiotically plausible cyclic trimetaphosphate. Ribozymes were selected from 1.6 × 10(14) different randomized sequences by metabolically coupling 6-thio GTP synthesis to primer extension by an RNA polymerase ribozyme within 10(16) emulsion droplets. Several functional RNAs were identified, one of which was characterized in more detail. Under optimized reaction conditions, this ribozyme produced GTP at a rate 18,000-fold higher than the uncatalyzed rate, with a turnover of 1.7-fold, and supported the incorporation of GTP into RNA oligomers in tandem with an RNA polymerase ribozyme. These results are discussed in the context of early life forms.
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spelling pubmed-84942902021-10-13 A GTP-synthesizing ribozyme selected by metabolic coupling to an RNA polymerase ribozyme Akoopie, Arvin Arriola, Joshua T. Magde, Douglas Müller, Ulrich F. Sci Adv Biomedicine and Life Sciences Synthesis of RNA in early life forms required chemically activated nucleotides, perhaps in the same form of nucleoside 5′-triphosphates (NTPs) as in the contemporary biosphere. We show the development of a catalytic RNA (ribozyme) that generates the nucleoside triphosphate guanosine 5′-triphosphate (GTP) from the nucleoside guanosine and the prebiotically plausible cyclic trimetaphosphate. Ribozymes were selected from 1.6 × 10(14) different randomized sequences by metabolically coupling 6-thio GTP synthesis to primer extension by an RNA polymerase ribozyme within 10(16) emulsion droplets. Several functional RNAs were identified, one of which was characterized in more detail. Under optimized reaction conditions, this ribozyme produced GTP at a rate 18,000-fold higher than the uncatalyzed rate, with a turnover of 1.7-fold, and supported the incorporation of GTP into RNA oligomers in tandem with an RNA polymerase ribozyme. These results are discussed in the context of early life forms. American Association for the Advancement of Science 2021-10-06 /pmc/articles/PMC8494290/ /pubmed/34613767 http://dx.doi.org/10.1126/sciadv.abj7487 Text en Copyright © 2021 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works. Distributed under a Creative Commons Attribution License 4.0 (CC BY). https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution license (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Biomedicine and Life Sciences
Akoopie, Arvin
Arriola, Joshua T.
Magde, Douglas
Müller, Ulrich F.
A GTP-synthesizing ribozyme selected by metabolic coupling to an RNA polymerase ribozyme
title A GTP-synthesizing ribozyme selected by metabolic coupling to an RNA polymerase ribozyme
title_full A GTP-synthesizing ribozyme selected by metabolic coupling to an RNA polymerase ribozyme
title_fullStr A GTP-synthesizing ribozyme selected by metabolic coupling to an RNA polymerase ribozyme
title_full_unstemmed A GTP-synthesizing ribozyme selected by metabolic coupling to an RNA polymerase ribozyme
title_short A GTP-synthesizing ribozyme selected by metabolic coupling to an RNA polymerase ribozyme
title_sort gtp-synthesizing ribozyme selected by metabolic coupling to an rna polymerase ribozyme
topic Biomedicine and Life Sciences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8494290/
https://www.ncbi.nlm.nih.gov/pubmed/34613767
http://dx.doi.org/10.1126/sciadv.abj7487
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