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Identification of a novel six‐gene signature with potential prognostic and therapeutic value in cervical cancer

INTRODUCTION: Cervical cancer has high mortality, high recurrence and poor prognosis. Although prognostic biomarkers such as clinicopathological features have been proposed, their accuracy and precision are far from satisfactory. Therefore, novel biomarkers are urgently needed for disease surveillan...

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Autores principales: Qu, Xinyu, Shi, Zhiwen, Guo, Jingjing, Guo, Chenyan, Qiu, Junjun, Hua, Keqin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8495282/
https://www.ncbi.nlm.nih.gov/pubmed/34498424
http://dx.doi.org/10.1002/cam4.4054
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author Qu, Xinyu
Shi, Zhiwen
Guo, Jingjing
Guo, Chenyan
Qiu, Junjun
Hua, Keqin
author_facet Qu, Xinyu
Shi, Zhiwen
Guo, Jingjing
Guo, Chenyan
Qiu, Junjun
Hua, Keqin
author_sort Qu, Xinyu
collection PubMed
description INTRODUCTION: Cervical cancer has high mortality, high recurrence and poor prognosis. Although prognostic biomarkers such as clinicopathological features have been proposed, their accuracy and precision are far from satisfactory. Therefore, novel biomarkers are urgently needed for disease surveillance, prognosis prediction and treatment selection. MATERIALS: Differentially expressed genes (DEGs) between cervical cancer and normal tissues from three microarray datasets extracted from the Gene Expression Omnibus platform were identified and screened. Based on these DEGs, a six‐gene prognostic signature was constructed using cervical squamous cell carcinoma and endocervical adenocarcinoma data from The Cancer Genome Atlas. Next, the molecular functions and related pathways of the six genes were investigated through gene set enrichment analysis and co‐expression analysis. Additionally, immunophenoscore analysis and the QuartataWeb Server were employed to explore the therapeutic value of the six‐gene signature. RESULTS: We discovered 178 overlapping DEGs in three microarray datasets and established a six‐gene (APOC1, GLTP, ISG20, SPP1, SLC24A3 and UPP1) prognostic signature with stable and excellent performance in predicting overall survival in different subgroups. Intriguingly, the six‐gene signature was closely associated with the immune response and tumour immune microenvironment. The six‐gene signature might be used for predicting response to immune checkpoint inhibitors (ICIs) and the six genes may serve as new drug targets for cervical cancer. CONCLUSION: Our study established a novel six‐gene (APOC1, GLTP, ISG20, SPP1, SLC24A3 and UPP1) signature that was closely associated with the immune response and tumour immune microenvironment. The six‐gene signature was indicative of aggressive features of cervical cancer and therefore might serve as a promising biomarker for predicting not only overall survival but also ICI treatment effectiveness. Moreover, three genes (UPP1, ISG20 and GLTP) within the six‐gene signature have the potential to become novel drug targets.
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spelling pubmed-84952822021-10-08 Identification of a novel six‐gene signature with potential prognostic and therapeutic value in cervical cancer Qu, Xinyu Shi, Zhiwen Guo, Jingjing Guo, Chenyan Qiu, Junjun Hua, Keqin Cancer Med Bioinformatics INTRODUCTION: Cervical cancer has high mortality, high recurrence and poor prognosis. Although prognostic biomarkers such as clinicopathological features have been proposed, their accuracy and precision are far from satisfactory. Therefore, novel biomarkers are urgently needed for disease surveillance, prognosis prediction and treatment selection. MATERIALS: Differentially expressed genes (DEGs) between cervical cancer and normal tissues from three microarray datasets extracted from the Gene Expression Omnibus platform were identified and screened. Based on these DEGs, a six‐gene prognostic signature was constructed using cervical squamous cell carcinoma and endocervical adenocarcinoma data from The Cancer Genome Atlas. Next, the molecular functions and related pathways of the six genes were investigated through gene set enrichment analysis and co‐expression analysis. Additionally, immunophenoscore analysis and the QuartataWeb Server were employed to explore the therapeutic value of the six‐gene signature. RESULTS: We discovered 178 overlapping DEGs in three microarray datasets and established a six‐gene (APOC1, GLTP, ISG20, SPP1, SLC24A3 and UPP1) prognostic signature with stable and excellent performance in predicting overall survival in different subgroups. Intriguingly, the six‐gene signature was closely associated with the immune response and tumour immune microenvironment. The six‐gene signature might be used for predicting response to immune checkpoint inhibitors (ICIs) and the six genes may serve as new drug targets for cervical cancer. CONCLUSION: Our study established a novel six‐gene (APOC1, GLTP, ISG20, SPP1, SLC24A3 and UPP1) signature that was closely associated with the immune response and tumour immune microenvironment. The six‐gene signature was indicative of aggressive features of cervical cancer and therefore might serve as a promising biomarker for predicting not only overall survival but also ICI treatment effectiveness. Moreover, three genes (UPP1, ISG20 and GLTP) within the six‐gene signature have the potential to become novel drug targets. John Wiley and Sons Inc. 2021-09-08 /pmc/articles/PMC8495282/ /pubmed/34498424 http://dx.doi.org/10.1002/cam4.4054 Text en © 2021 The Authors. Cancer Medicine published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Bioinformatics
Qu, Xinyu
Shi, Zhiwen
Guo, Jingjing
Guo, Chenyan
Qiu, Junjun
Hua, Keqin
Identification of a novel six‐gene signature with potential prognostic and therapeutic value in cervical cancer
title Identification of a novel six‐gene signature with potential prognostic and therapeutic value in cervical cancer
title_full Identification of a novel six‐gene signature with potential prognostic and therapeutic value in cervical cancer
title_fullStr Identification of a novel six‐gene signature with potential prognostic and therapeutic value in cervical cancer
title_full_unstemmed Identification of a novel six‐gene signature with potential prognostic and therapeutic value in cervical cancer
title_short Identification of a novel six‐gene signature with potential prognostic and therapeutic value in cervical cancer
title_sort identification of a novel six‐gene signature with potential prognostic and therapeutic value in cervical cancer
topic Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8495282/
https://www.ncbi.nlm.nih.gov/pubmed/34498424
http://dx.doi.org/10.1002/cam4.4054
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