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CDKN2A is a prognostic biomarker and correlated with immune infiltrates in hepatocellular carcinoma
Cyclin dependent kinase inhibitor 2A (CDKN2A) is an essential regulator of immune cell functionality, but the mechanisms whereby it drives immune infiltration in hepatocellular carcinoma (HCC) remain unclear. In the present study, we studied the association with CDKN2A expression and immune invasion...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Portland Press Ltd.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8495430/ https://www.ncbi.nlm.nih.gov/pubmed/34405225 http://dx.doi.org/10.1042/BSR20211103 |
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author | Luo, Jun-peng Wang, Jing Huang, Jin-hua |
author_facet | Luo, Jun-peng Wang, Jing Huang, Jin-hua |
author_sort | Luo, Jun-peng |
collection | PubMed |
description | Cyclin dependent kinase inhibitor 2A (CDKN2A) is an essential regulator of immune cell functionality, but the mechanisms whereby it drives immune infiltration in hepatocellular carcinoma (HCC) remain unclear. In the present study, we studied the association with CDKN2A expression and immune invasion with the risk of developing HCC. A totally of 2207 different genes were found between HCC and adjacent liver tissues from TCGA and GEO databases. CDKN2A was highly expressed in HCC and associated with poorer overall survival and disease-free survival. Notably, CDKN2A expression was positively correlated with infiltrating levels into purity, B cell, CD+8 T cell, CD+4 T cell, macrophage, neutrophil, and dendritic cells in HCC. CDKN2A expression showed strong correlations between diverse immune marker sets in HCC. These findings suggest that CDKN2A expression potentially contributes to regulation of tumor-associated macrophages and can be used as a prognostic biomarker for determining prognosis and immune infiltration in HCC. |
format | Online Article Text |
id | pubmed-8495430 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Portland Press Ltd. |
record_format | MEDLINE/PubMed |
spelling | pubmed-84954302021-10-14 CDKN2A is a prognostic biomarker and correlated with immune infiltrates in hepatocellular carcinoma Luo, Jun-peng Wang, Jing Huang, Jin-hua Biosci Rep Bioinformatics Cyclin dependent kinase inhibitor 2A (CDKN2A) is an essential regulator of immune cell functionality, but the mechanisms whereby it drives immune infiltration in hepatocellular carcinoma (HCC) remain unclear. In the present study, we studied the association with CDKN2A expression and immune invasion with the risk of developing HCC. A totally of 2207 different genes were found between HCC and adjacent liver tissues from TCGA and GEO databases. CDKN2A was highly expressed in HCC and associated with poorer overall survival and disease-free survival. Notably, CDKN2A expression was positively correlated with infiltrating levels into purity, B cell, CD+8 T cell, CD+4 T cell, macrophage, neutrophil, and dendritic cells in HCC. CDKN2A expression showed strong correlations between diverse immune marker sets in HCC. These findings suggest that CDKN2A expression potentially contributes to regulation of tumor-associated macrophages and can be used as a prognostic biomarker for determining prognosis and immune infiltration in HCC. Portland Press Ltd. 2021-10-06 /pmc/articles/PMC8495430/ /pubmed/34405225 http://dx.doi.org/10.1042/BSR20211103 Text en © 2021 The Author(s). https://creativecommons.org/licenses/by/4.0/This is an open access article published by Portland Press Limited on behalf of the Biochemical Society and distributed under the Creative Commons Attribution License 4.0 (CC BY) (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Bioinformatics Luo, Jun-peng Wang, Jing Huang, Jin-hua CDKN2A is a prognostic biomarker and correlated with immune infiltrates in hepatocellular carcinoma |
title | CDKN2A is a prognostic biomarker and correlated with immune infiltrates in hepatocellular carcinoma |
title_full | CDKN2A is a prognostic biomarker and correlated with immune infiltrates in hepatocellular carcinoma |
title_fullStr | CDKN2A is a prognostic biomarker and correlated with immune infiltrates in hepatocellular carcinoma |
title_full_unstemmed | CDKN2A is a prognostic biomarker and correlated with immune infiltrates in hepatocellular carcinoma |
title_short | CDKN2A is a prognostic biomarker and correlated with immune infiltrates in hepatocellular carcinoma |
title_sort | cdkn2a is a prognostic biomarker and correlated with immune infiltrates in hepatocellular carcinoma |
topic | Bioinformatics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8495430/ https://www.ncbi.nlm.nih.gov/pubmed/34405225 http://dx.doi.org/10.1042/BSR20211103 |
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