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Unraveling the plant diversity of the Amazonian canga through DNA barcoding
The canga of the Serra dos Carajás, in Eastern Amazon, is home to a unique open plant community, harboring several endemic and rare species. Although a complete flora survey has been recently published, scarce to no genetic information is available for most plant species of the ironstone outcrops of...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8495817/ https://www.ncbi.nlm.nih.gov/pubmed/34646474 http://dx.doi.org/10.1002/ece3.8057 |
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author | Vasconcelos, Santelmo Nunes, Gisele L. Dias, Mariana C. Lorena, Jamily Oliveira, Renato R. M. Lima, Talvâne G. L. Pires, Eder S. Valadares, Rafael B. S. Alves, Ronnie Watanabe, Maurício T. C. Zappi, Daniela C. Hiura, Alice L. Pastore, Mayara Vasconcelos, Liziane V. Mota, Nara F. O. Viana, Pedro L. Gil, André S. B. Simões, André O. Imperatriz‐Fonseca, Vera L. Harley, Raymond M. Giulietti, Ana M. Oliveira, Guilherme |
author_facet | Vasconcelos, Santelmo Nunes, Gisele L. Dias, Mariana C. Lorena, Jamily Oliveira, Renato R. M. Lima, Talvâne G. L. Pires, Eder S. Valadares, Rafael B. S. Alves, Ronnie Watanabe, Maurício T. C. Zappi, Daniela C. Hiura, Alice L. Pastore, Mayara Vasconcelos, Liziane V. Mota, Nara F. O. Viana, Pedro L. Gil, André S. B. Simões, André O. Imperatriz‐Fonseca, Vera L. Harley, Raymond M. Giulietti, Ana M. Oliveira, Guilherme |
author_sort | Vasconcelos, Santelmo |
collection | PubMed |
description | The canga of the Serra dos Carajás, in Eastern Amazon, is home to a unique open plant community, harboring several endemic and rare species. Although a complete flora survey has been recently published, scarce to no genetic information is available for most plant species of the ironstone outcrops of the Serra dos Carajás. In this scenario, DNA barcoding appears as a fast and effective approach to assess the genetic diversity of the Serra dos Carajás flora, considering the growing need for robust biodiversity conservation planning in such an area with industrial mining activities. Thus, after testing eight different DNA barcode markers (matK, rbcL, rpoB, rpoC1, atpF‐atpH, psbK‐psbI, trnH‐psbA, and ITS2), we chose rbcL and ITS2 as the most suitable markers for a broad application in the regional flora. Here we describe DNA barcodes for 1,130 specimens of 538 species, 323 genera, and 115 families of vascular plants from a highly diverse flora in the Amazon basin, with a total of 344 species being barcoded for the first time. In addition, we assessed the potential of using DNA metabarcoding of bulk samples for surveying plant diversity in the canga. Upon achieving the first comprehensive DNA barcoding effort directed to a complete flora in the Brazilian Amazon, we discuss the relevance of our results to guide future conservation measures in the Serra dos Carajás. |
format | Online Article Text |
id | pubmed-8495817 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-84958172021-10-12 Unraveling the plant diversity of the Amazonian canga through DNA barcoding Vasconcelos, Santelmo Nunes, Gisele L. Dias, Mariana C. Lorena, Jamily Oliveira, Renato R. M. Lima, Talvâne G. L. Pires, Eder S. Valadares, Rafael B. S. Alves, Ronnie Watanabe, Maurício T. C. Zappi, Daniela C. Hiura, Alice L. Pastore, Mayara Vasconcelos, Liziane V. Mota, Nara F. O. Viana, Pedro L. Gil, André S. B. Simões, André O. Imperatriz‐Fonseca, Vera L. Harley, Raymond M. Giulietti, Ana M. Oliveira, Guilherme Ecol Evol Original Research The canga of the Serra dos Carajás, in Eastern Amazon, is home to a unique open plant community, harboring several endemic and rare species. Although a complete flora survey has been recently published, scarce to no genetic information is available for most plant species of the ironstone outcrops of the Serra dos Carajás. In this scenario, DNA barcoding appears as a fast and effective approach to assess the genetic diversity of the Serra dos Carajás flora, considering the growing need for robust biodiversity conservation planning in such an area with industrial mining activities. Thus, after testing eight different DNA barcode markers (matK, rbcL, rpoB, rpoC1, atpF‐atpH, psbK‐psbI, trnH‐psbA, and ITS2), we chose rbcL and ITS2 as the most suitable markers for a broad application in the regional flora. Here we describe DNA barcodes for 1,130 specimens of 538 species, 323 genera, and 115 families of vascular plants from a highly diverse flora in the Amazon basin, with a total of 344 species being barcoded for the first time. In addition, we assessed the potential of using DNA metabarcoding of bulk samples for surveying plant diversity in the canga. Upon achieving the first comprehensive DNA barcoding effort directed to a complete flora in the Brazilian Amazon, we discuss the relevance of our results to guide future conservation measures in the Serra dos Carajás. John Wiley and Sons Inc. 2021-08-31 /pmc/articles/PMC8495817/ /pubmed/34646474 http://dx.doi.org/10.1002/ece3.8057 Text en © 2021 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Research Vasconcelos, Santelmo Nunes, Gisele L. Dias, Mariana C. Lorena, Jamily Oliveira, Renato R. M. Lima, Talvâne G. L. Pires, Eder S. Valadares, Rafael B. S. Alves, Ronnie Watanabe, Maurício T. C. Zappi, Daniela C. Hiura, Alice L. Pastore, Mayara Vasconcelos, Liziane V. Mota, Nara F. O. Viana, Pedro L. Gil, André S. B. Simões, André O. Imperatriz‐Fonseca, Vera L. Harley, Raymond M. Giulietti, Ana M. Oliveira, Guilherme Unraveling the plant diversity of the Amazonian canga through DNA barcoding |
title | Unraveling the plant diversity of the Amazonian canga through DNA barcoding |
title_full | Unraveling the plant diversity of the Amazonian canga through DNA barcoding |
title_fullStr | Unraveling the plant diversity of the Amazonian canga through DNA barcoding |
title_full_unstemmed | Unraveling the plant diversity of the Amazonian canga through DNA barcoding |
title_short | Unraveling the plant diversity of the Amazonian canga through DNA barcoding |
title_sort | unraveling the plant diversity of the amazonian canga through dna barcoding |
topic | Original Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8495817/ https://www.ncbi.nlm.nih.gov/pubmed/34646474 http://dx.doi.org/10.1002/ece3.8057 |
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