Cargando…

Unraveling the plant diversity of the Amazonian canga through DNA barcoding

The canga of the Serra dos Carajás, in Eastern Amazon, is home to a unique open plant community, harboring several endemic and rare species. Although a complete flora survey has been recently published, scarce to no genetic information is available for most plant species of the ironstone outcrops of...

Descripción completa

Detalles Bibliográficos
Autores principales: Vasconcelos, Santelmo, Nunes, Gisele L., Dias, Mariana C., Lorena, Jamily, Oliveira, Renato R. M., Lima, Talvâne G. L., Pires, Eder S., Valadares, Rafael B. S., Alves, Ronnie, Watanabe, Maurício T. C., Zappi, Daniela C., Hiura, Alice L., Pastore, Mayara, Vasconcelos, Liziane V., Mota, Nara F. O., Viana, Pedro L., Gil, André S. B., Simões, André O., Imperatriz‐Fonseca, Vera L., Harley, Raymond M., Giulietti, Ana M., Oliveira, Guilherme
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8495817/
https://www.ncbi.nlm.nih.gov/pubmed/34646474
http://dx.doi.org/10.1002/ece3.8057
_version_ 1784579625561620480
author Vasconcelos, Santelmo
Nunes, Gisele L.
Dias, Mariana C.
Lorena, Jamily
Oliveira, Renato R. M.
Lima, Talvâne G. L.
Pires, Eder S.
Valadares, Rafael B. S.
Alves, Ronnie
Watanabe, Maurício T. C.
Zappi, Daniela C.
Hiura, Alice L.
Pastore, Mayara
Vasconcelos, Liziane V.
Mota, Nara F. O.
Viana, Pedro L.
Gil, André S. B.
Simões, André O.
Imperatriz‐Fonseca, Vera L.
Harley, Raymond M.
Giulietti, Ana M.
Oliveira, Guilherme
author_facet Vasconcelos, Santelmo
Nunes, Gisele L.
Dias, Mariana C.
Lorena, Jamily
Oliveira, Renato R. M.
Lima, Talvâne G. L.
Pires, Eder S.
Valadares, Rafael B. S.
Alves, Ronnie
Watanabe, Maurício T. C.
Zappi, Daniela C.
Hiura, Alice L.
Pastore, Mayara
Vasconcelos, Liziane V.
Mota, Nara F. O.
Viana, Pedro L.
Gil, André S. B.
Simões, André O.
Imperatriz‐Fonseca, Vera L.
Harley, Raymond M.
Giulietti, Ana M.
Oliveira, Guilherme
author_sort Vasconcelos, Santelmo
collection PubMed
description The canga of the Serra dos Carajás, in Eastern Amazon, is home to a unique open plant community, harboring several endemic and rare species. Although a complete flora survey has been recently published, scarce to no genetic information is available for most plant species of the ironstone outcrops of the Serra dos Carajás. In this scenario, DNA barcoding appears as a fast and effective approach to assess the genetic diversity of the Serra dos Carajás flora, considering the growing need for robust biodiversity conservation planning in such an area with industrial mining activities. Thus, after testing eight different DNA barcode markers (matK, rbcL, rpoB, rpoC1, atpF‐atpH, psbK‐psbI, trnH‐psbA, and ITS2), we chose rbcL and ITS2 as the most suitable markers for a broad application in the regional flora. Here we describe DNA barcodes for 1,130 specimens of 538 species, 323 genera, and 115 families of vascular plants from a highly diverse flora in the Amazon basin, with a total of 344 species being barcoded for the first time. In addition, we assessed the potential of using DNA metabarcoding of bulk samples for surveying plant diversity in the canga. Upon achieving the first comprehensive DNA barcoding effort directed to a complete flora in the Brazilian Amazon, we discuss the relevance of our results to guide future conservation measures in the Serra dos Carajás.
format Online
Article
Text
id pubmed-8495817
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher John Wiley and Sons Inc.
record_format MEDLINE/PubMed
spelling pubmed-84958172021-10-12 Unraveling the plant diversity of the Amazonian canga through DNA barcoding Vasconcelos, Santelmo Nunes, Gisele L. Dias, Mariana C. Lorena, Jamily Oliveira, Renato R. M. Lima, Talvâne G. L. Pires, Eder S. Valadares, Rafael B. S. Alves, Ronnie Watanabe, Maurício T. C. Zappi, Daniela C. Hiura, Alice L. Pastore, Mayara Vasconcelos, Liziane V. Mota, Nara F. O. Viana, Pedro L. Gil, André S. B. Simões, André O. Imperatriz‐Fonseca, Vera L. Harley, Raymond M. Giulietti, Ana M. Oliveira, Guilherme Ecol Evol Original Research The canga of the Serra dos Carajás, in Eastern Amazon, is home to a unique open plant community, harboring several endemic and rare species. Although a complete flora survey has been recently published, scarce to no genetic information is available for most plant species of the ironstone outcrops of the Serra dos Carajás. In this scenario, DNA barcoding appears as a fast and effective approach to assess the genetic diversity of the Serra dos Carajás flora, considering the growing need for robust biodiversity conservation planning in such an area with industrial mining activities. Thus, after testing eight different DNA barcode markers (matK, rbcL, rpoB, rpoC1, atpF‐atpH, psbK‐psbI, trnH‐psbA, and ITS2), we chose rbcL and ITS2 as the most suitable markers for a broad application in the regional flora. Here we describe DNA barcodes for 1,130 specimens of 538 species, 323 genera, and 115 families of vascular plants from a highly diverse flora in the Amazon basin, with a total of 344 species being barcoded for the first time. In addition, we assessed the potential of using DNA metabarcoding of bulk samples for surveying plant diversity in the canga. Upon achieving the first comprehensive DNA barcoding effort directed to a complete flora in the Brazilian Amazon, we discuss the relevance of our results to guide future conservation measures in the Serra dos Carajás. John Wiley and Sons Inc. 2021-08-31 /pmc/articles/PMC8495817/ /pubmed/34646474 http://dx.doi.org/10.1002/ece3.8057 Text en © 2021 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Research
Vasconcelos, Santelmo
Nunes, Gisele L.
Dias, Mariana C.
Lorena, Jamily
Oliveira, Renato R. M.
Lima, Talvâne G. L.
Pires, Eder S.
Valadares, Rafael B. S.
Alves, Ronnie
Watanabe, Maurício T. C.
Zappi, Daniela C.
Hiura, Alice L.
Pastore, Mayara
Vasconcelos, Liziane V.
Mota, Nara F. O.
Viana, Pedro L.
Gil, André S. B.
Simões, André O.
Imperatriz‐Fonseca, Vera L.
Harley, Raymond M.
Giulietti, Ana M.
Oliveira, Guilherme
Unraveling the plant diversity of the Amazonian canga through DNA barcoding
title Unraveling the plant diversity of the Amazonian canga through DNA barcoding
title_full Unraveling the plant diversity of the Amazonian canga through DNA barcoding
title_fullStr Unraveling the plant diversity of the Amazonian canga through DNA barcoding
title_full_unstemmed Unraveling the plant diversity of the Amazonian canga through DNA barcoding
title_short Unraveling the plant diversity of the Amazonian canga through DNA barcoding
title_sort unraveling the plant diversity of the amazonian canga through dna barcoding
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8495817/
https://www.ncbi.nlm.nih.gov/pubmed/34646474
http://dx.doi.org/10.1002/ece3.8057
work_keys_str_mv AT vasconcelossantelmo unravelingtheplantdiversityoftheamazoniancangathroughdnabarcoding
AT nunesgiselel unravelingtheplantdiversityoftheamazoniancangathroughdnabarcoding
AT diasmarianac unravelingtheplantdiversityoftheamazoniancangathroughdnabarcoding
AT lorenajamily unravelingtheplantdiversityoftheamazoniancangathroughdnabarcoding
AT oliveirarenatorm unravelingtheplantdiversityoftheamazoniancangathroughdnabarcoding
AT limatalvanegl unravelingtheplantdiversityoftheamazoniancangathroughdnabarcoding
AT pireseders unravelingtheplantdiversityoftheamazoniancangathroughdnabarcoding
AT valadaresrafaelbs unravelingtheplantdiversityoftheamazoniancangathroughdnabarcoding
AT alvesronnie unravelingtheplantdiversityoftheamazoniancangathroughdnabarcoding
AT watanabemauriciotc unravelingtheplantdiversityoftheamazoniancangathroughdnabarcoding
AT zappidanielac unravelingtheplantdiversityoftheamazoniancangathroughdnabarcoding
AT hiuraalicel unravelingtheplantdiversityoftheamazoniancangathroughdnabarcoding
AT pastoremayara unravelingtheplantdiversityoftheamazoniancangathroughdnabarcoding
AT vasconceloslizianev unravelingtheplantdiversityoftheamazoniancangathroughdnabarcoding
AT motanarafo unravelingtheplantdiversityoftheamazoniancangathroughdnabarcoding
AT vianapedrol unravelingtheplantdiversityoftheamazoniancangathroughdnabarcoding
AT gilandresb unravelingtheplantdiversityoftheamazoniancangathroughdnabarcoding
AT simoesandreo unravelingtheplantdiversityoftheamazoniancangathroughdnabarcoding
AT imperatrizfonsecaveral unravelingtheplantdiversityoftheamazoniancangathroughdnabarcoding
AT harleyraymondm unravelingtheplantdiversityoftheamazoniancangathroughdnabarcoding
AT giuliettianam unravelingtheplantdiversityoftheamazoniancangathroughdnabarcoding
AT oliveiraguilherme unravelingtheplantdiversityoftheamazoniancangathroughdnabarcoding