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Identification of ABC transporter G subfamily in white lupin and functional characterization of L.albABGC29 in phosphorus use

BACKGROUND: White lupin (Lupinus albus) is a leguminous crop with elite adaptive ability in phosphorus-deficient soil and used as a model plant for studying phosphorus (P) use. However, the genetic basis of its adaptation to low P (LP) remains unclear. ATPase binding cassette (ABC) transports G subf...

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Autores principales: Aslam, Mehtab Muhammad, Waseem, Muhammad, Zhang, Qian, Ke, Wang, Zhang, Jianhua, Xu, Weifeng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8495970/
https://www.ncbi.nlm.nih.gov/pubmed/34615466
http://dx.doi.org/10.1186/s12864-021-08015-0
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author Aslam, Mehtab Muhammad
Waseem, Muhammad
Zhang, Qian
Ke, Wang
Zhang, Jianhua
Xu, Weifeng
author_facet Aslam, Mehtab Muhammad
Waseem, Muhammad
Zhang, Qian
Ke, Wang
Zhang, Jianhua
Xu, Weifeng
author_sort Aslam, Mehtab Muhammad
collection PubMed
description BACKGROUND: White lupin (Lupinus albus) is a leguminous crop with elite adaptive ability in phosphorus-deficient soil and used as a model plant for studying phosphorus (P) use. However, the genetic basis of its adaptation to low P (LP) remains unclear. ATPase binding cassette (ABC) transports G subfamily play a crucial role in the transportation of biological molecules across the membrane. To date, identification of this subfamily has been analyzed in some plants, but no systematic analysis of these transporters in phosphorus acquisition is available for white lupin. RESULTS: This study identified 66 ABCG gene family members in the white lupin genome using comprehensive approaches. Phylogenetic analysis of white lupin ABCG transporters revealed six subclades based on their counterparts in Arabidopsis, displaying distinct gene structure and motif distribution in each cluster. Influences of the whole genome duplication on the evolution of L.albABCGs were investigated in detail. Segmental duplications appear to be the major driving force for the expansion of ABCGs in white lupin. Analysis of the Ka/Ks ratios indicated that the paralogs of the L.albABCG subfamily members principally underwent purifying selection. However, it was found that L.albABCG29 was a result of both tandem and segmental duplications. Overexpression of L.albABCG29 in white lupin hairy root enhanced P accumulation in cluster root under LP and improved plant growth. Histochemical GUS staining indicated that L.albABCG29 expression increased under LP in white lupin roots. Further, overexpression of L.albABCG29 in rice significantly improved P use under combined soil drying and LP by improving root growth associated with increased rhizosheath formation. CONCLUSION: Through systematic and comprehensive genome-wide bioinformatics analysis, including conserved domain, gene structures, chromosomal distribution, phylogenetic relationships, and gene duplication analysis, the L.albABCG subfamily was identified in white lupin, and L.albABCG29 characterized in detail. In summary, our results provide deep insight into the characterization of the L.albABCG subfamily and the role of L.albABCG29 in improving P use. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12864-021-08015-0.
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spelling pubmed-84959702021-10-07 Identification of ABC transporter G subfamily in white lupin and functional characterization of L.albABGC29 in phosphorus use Aslam, Mehtab Muhammad Waseem, Muhammad Zhang, Qian Ke, Wang Zhang, Jianhua Xu, Weifeng BMC Genomics Research BACKGROUND: White lupin (Lupinus albus) is a leguminous crop with elite adaptive ability in phosphorus-deficient soil and used as a model plant for studying phosphorus (P) use. However, the genetic basis of its adaptation to low P (LP) remains unclear. ATPase binding cassette (ABC) transports G subfamily play a crucial role in the transportation of biological molecules across the membrane. To date, identification of this subfamily has been analyzed in some plants, but no systematic analysis of these transporters in phosphorus acquisition is available for white lupin. RESULTS: This study identified 66 ABCG gene family members in the white lupin genome using comprehensive approaches. Phylogenetic analysis of white lupin ABCG transporters revealed six subclades based on their counterparts in Arabidopsis, displaying distinct gene structure and motif distribution in each cluster. Influences of the whole genome duplication on the evolution of L.albABCGs were investigated in detail. Segmental duplications appear to be the major driving force for the expansion of ABCGs in white lupin. Analysis of the Ka/Ks ratios indicated that the paralogs of the L.albABCG subfamily members principally underwent purifying selection. However, it was found that L.albABCG29 was a result of both tandem and segmental duplications. Overexpression of L.albABCG29 in white lupin hairy root enhanced P accumulation in cluster root under LP and improved plant growth. Histochemical GUS staining indicated that L.albABCG29 expression increased under LP in white lupin roots. Further, overexpression of L.albABCG29 in rice significantly improved P use under combined soil drying and LP by improving root growth associated with increased rhizosheath formation. CONCLUSION: Through systematic and comprehensive genome-wide bioinformatics analysis, including conserved domain, gene structures, chromosomal distribution, phylogenetic relationships, and gene duplication analysis, the L.albABCG subfamily was identified in white lupin, and L.albABCG29 characterized in detail. In summary, our results provide deep insight into the characterization of the L.albABCG subfamily and the role of L.albABCG29 in improving P use. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12864-021-08015-0. BioMed Central 2021-10-06 /pmc/articles/PMC8495970/ /pubmed/34615466 http://dx.doi.org/10.1186/s12864-021-08015-0 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Aslam, Mehtab Muhammad
Waseem, Muhammad
Zhang, Qian
Ke, Wang
Zhang, Jianhua
Xu, Weifeng
Identification of ABC transporter G subfamily in white lupin and functional characterization of L.albABGC29 in phosphorus use
title Identification of ABC transporter G subfamily in white lupin and functional characterization of L.albABGC29 in phosphorus use
title_full Identification of ABC transporter G subfamily in white lupin and functional characterization of L.albABGC29 in phosphorus use
title_fullStr Identification of ABC transporter G subfamily in white lupin and functional characterization of L.albABGC29 in phosphorus use
title_full_unstemmed Identification of ABC transporter G subfamily in white lupin and functional characterization of L.albABGC29 in phosphorus use
title_short Identification of ABC transporter G subfamily in white lupin and functional characterization of L.albABGC29 in phosphorus use
title_sort identification of abc transporter g subfamily in white lupin and functional characterization of l.albabgc29 in phosphorus use
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8495970/
https://www.ncbi.nlm.nih.gov/pubmed/34615466
http://dx.doi.org/10.1186/s12864-021-08015-0
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