Cargando…
Mapping and modeling the genomic basis of differential RNA isoform expression at single-cell resolution with LR-Split-seq
The rise in throughput and quality of long-read sequencing should allow unambiguous identification of full-length transcript isoforms. However, its application to single-cell RNA-seq has been limited by throughput and expense. Here we develop and characterize long-read Split-seq (LR-Split-seq), whic...
Autores principales: | Rebboah, Elisabeth, Reese, Fairlie, Williams, Katherine, Balderrama-Gutierrez, Gabriela, McGill, Cassandra, Trout, Diane, Rodriguez, Isaryhia, Liang, Heidi, Wold, Barbara J., Mortazavi, Ali |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8495978/ https://www.ncbi.nlm.nih.gov/pubmed/34620214 http://dx.doi.org/10.1186/s13059-021-02505-w |
Ejemplares similares
-
L-GIREMI uncovers RNA editing sites in long-read RNA-seq
por: Liu, Zhiheng, et al.
Publicado: (2023) -
Simulation-based benchmarking of isoform quantification in single-cell RNA-seq
por: Westoby, Jennifer, et al.
Publicado: (2018) -
The ENCODE4 long-read RNA-seq collection reveals distinct classes of transcript structure diversity
por: Reese, Fairlie, et al.
Publicado: (2023) -
Haplotype and isoform specific expression estimation using multi-mapping RNA-seq reads
por: Turro, Ernest, et al.
Publicado: (2011) -
iReckon: Simultaneous isoform discovery and abundance estimation from RNA-seq data
por: Mezlini, Aziz M., et al.
Publicado: (2013)