Cargando…

Haplotype genomic prediction of phenotypic values based on chromosome distance and gene boundaries using low-coverage sequencing in Duroc pigs

BACKGROUND: Genomic selection using single nucleotide polymorphism (SNP) markers has been widely used for genetic improvement of livestock, but most current methods of genomic selection are based on SNP models. In this study, we investigated the prediction accuracies of haplotype models based on fix...

Descripción completa

Detalles Bibliográficos
Autores principales:	Bian, Cheng, Prakapenka, Dzianis, Tan, Cheng, Yang, Ruifei, Zhu, Di, Guo, Xiaoli, Liu, Dewu, Cai, Gengyuan, Li, Yalan, Liang, Zuoxiang, Wu, Zhenfang, Da, Yang, Hu, Xiaoxiang
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2021
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8496108/ https://www.ncbi.nlm.nih.gov/pubmed/34620094 http://dx.doi.org/10.1186/s12711-021-00661-y

Ejemplares similares

Genome-wide association study and accuracy of genomic prediction for teat number in Duroc pigs using genotyping-by-sequencing
por: Tan, Cheng, et al.
Publicado: (2017)

Accelerated deciphering of the genetic architecture of agricultural economic traits in pigs using a low-coverage whole-genome sequencing strategy
por: Yang, Ruifei, et al.
Publicado: (2021)

GVCHAP: A Computing Pipeline for Genomic Prediction and Variance Component Estimation Using Haplotypes and SNP Markers
por: Prakapenka, Dzianis, et al.
Publicado: (2020)

Comparison of the Accuracy of Epistasis and Haplotype Models for Genomic Prediction of Seven Human Phenotypes
por: Liang, Zuoxiang, et al.
Publicado: (2023)

Multifactorial methods integrating haplotype and epistasis effects for genomic estimation and prediction of quantitative traits
por: Da, Yang, et al.
Publicado: (2022)

Haplotype Analysis of Genomic Prediction Using Structural and Functional Genomic Information for Seven Human Phenotypes
por: Liang, Zuoxiang, et al.
Publicado: (2020)

Genetic Architecture of Feeding Behavior and Feed Efficiency in a Duroc Pig Population
por: Ding, Rongrong, et al.
Publicado: (2018)

Genome-wide association study reveals genetic loci and candidate genes for average daily gain in Duroc pigs
por: Quan, Jianping, et al.
Publicado: (2018)

Study on Hematological and Biochemical Characters of Cloned Duroc Pigs and Their Progeny
por: Gu, Ting, et al.
Publicado: (2019)

Genomic prediction based on selective linkage disequilibrium pruning of low-coverage whole-genome sequence variants in a pure Duroc population
por: Zhu, Di, et al.
Publicado: (2023)

Identification of Homozygous Regions With Adverse Effects on the Five Economic Traits of Duroc Pigs
por: Wang, Shiyuan, et al.
Publicado: (2022)

Genome-Wide Association Study of Age at First Calving in U.S. Holstein Cows
por: Prakapenka, Dzianis, et al.
Publicado: (2023)

Introgression of Chinese haplotypes contributed to the improvement of Danish Duroc pigs
por: Chen, Minhui, et al.
Publicado: (2018)

Assessment of Heterozygosity and Genome-Wide Analysis of Heterozygosity Regions in Two Duroc Pig Populations
por: Ruan, Donglin, et al.
Publicado: (2022)

Single-Locus and Multi-Locus Genome-Wide Association Studies for Intramuscular Fat in Duroc Pigs
por: Ding, Rongrong, et al.
Publicado: (2019)

Genome-wide detection of CNV regions and their potential association with growth and fatness traits in Duroc pigs
por: Qiu, Yibin, et al.
Publicado: (2021)

Genome-Wide Association Study for Body Length, Body Height, and Total Teat Number in Large White Pigs
por: Hong, Yifeng, et al.
Publicado: (2021)

Meta-analysis of genome-wide association studies for loin muscle area and loin muscle depth in two Duroc pig populations
por: Zhuang, Zhanwei, et al.
Publicado: (2019)

Genome-wide association analysis reveals genetic loci and candidate genes for feeding behavior and eating efficiency in Duroc boars
por: Ding, Rongrong, et al.
Publicado: (2017)

Genome-Wide Detection of Genetic Loci and Candidate Genes for Body Conformation Traits in Duroc × Landrace × Yorkshire Crossbred Pigs
por: Zhang, Hui, et al.
Publicado: (2021)

Weighted Single-Step GWAS Identified Candidate Genes Associated with Growth Traits in a Duroc Pig Population
por: Ruan, Donglin, et al.
Publicado: (2021)

A Large-Scale Genome-Wide Association Study of Epistasis Effects of Production Traits and Daughter Pregnancy Rate in U.S. Holstein Cattle
por: Prakapenka, Dzianis, et al.
Publicado: (2021)

Genome-Wide Association Studies for Flesh Color and Intramuscular Fat in (Duroc × Landrace × Large White) Crossbred Commercial Pigs
por: Li, Hao, et al.
Publicado: (2022)

Genome-Wide Association Analysis Reveals Genetic Loci and Candidate Genes for Chest, Abdominal, and Waist Circumferences in Two Duroc Pig Populations
por: Zhou, Shenping, et al.
Publicado: (2022)

Runs of Homozygosity Uncover Potential Functional-Altering Mutation Associated With Body Weight and Length in Two Duroc Pig Lines
por: Wang, Xiaopeng, et al.
Publicado: (2022)

Genome-wide association analyses identify known and novel loci for teat number in Duroc pigs using single-locus and multi-locus models
por: Zhuang, Zhanwei, et al.
Publicado: (2020)

A composite strategy of genome-wide association study and copy number variation analysis for carcass traits in a Duroc pig population
por: Ding, Rongrong, et al.
Publicado: (2022)

Improving Prediction Accuracy Using Multi-allelic Haplotype Prediction and Training Population Optimization in Wheat
por: Sallam, Ahmad H., et al.
Publicado: (2020)

A Million-Cow Genome-Wide Association Study of Three Fertility Traits in U.S. Holstein Cows
por: Liang, Zuoxiang, et al.
Publicado: (2023)

Genome Wide Association Analysis Reveals New Production Trait Genes in a Male Duroc Population
por: Wang, Kejun, et al.
Publicado: (2015)

Genomic Analyses Revealed the Genetic Difference and Potential Selection Genes of Growth Traits in Two Duroc Lines
por: Li, Desen, et al.
Publicado: (2021)

Comparative Characterization of Volatile Compounds of Ningxiang Pig, Duroc and Their Crosses (Duroc × Ningxiang) by Using SPME-GC-MS
por: Zhu, Bangqiang, et al.
Publicado: (2023)

Selection of Optimal Ancestry Informative Markers for Classification and Ancestry Proportion Estimation in Pigs
por: Liang, Zuoxiang, et al.
Publicado: (2019)

Transcriptome Analysis of the Adipose Tissue of Luchuan and Duroc Pigs
por: Pan, Hongyuan, et al.
Publicado: (2022)

The SWine IMputation (SWIM) haplotype reference panel enables nucleotide resolution genetic mapping in pigs
por: Ding, Rongrong, et al.
Publicado: (2023)

Genomic Inbreeding and Relatedness in Wild Panda Populations
por: Garbe, John R., et al.
Publicado: (2016)

The fecal microbiota composition of boar Duroc, Yorkshire, Landrace and Hampshire pigs
por: Xiao, Yingping, et al.
Publicado: (2017)

Comparison of hypertrophic scarring on a red Duroc pig and a Guangxi Mini Bama pig
por: Ning, Xiaoyu, et al.
Publicado: (2020)

Comparison of Carcass Characteristics and Meat Quality between Duroc and Crossbred Pigs
por: Choi, Jung-Seok, et al.
Publicado: (2014)

A meta-analysis of genome-wide association studies for average daily gain and lean meat percentage in two Duroc pig populations
por: Zhou, Shenping, et al.
Publicado: (2021)

Cannot write session to /tmp/vufind_sessions/sess_stj5a5jcr3cpqvkd6tdm95vstn