Cargando…
Chromosome assembled and annotated genome sequence of Aspergillus flavus NRRL 3357
Aspergillus flavus is an opportunistic pathogen of crops, including peanuts and maize, and is the second leading cause of aspergillosis in immunocompromised patients. A. flavus is also a major producer of the mycotoxin, aflatoxin, a potent carcinogen, which results in significant crop losses annuall...
Autores principales: | , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8496237/ https://www.ncbi.nlm.nih.gov/pubmed/34849826 http://dx.doi.org/10.1093/g3journal/jkab213 |
_version_ | 1784579713413414912 |
---|---|
author | Skerker, Jeffrey M Pianalto, Kaila M Mondo, Stephen J Yang, Kunlong Arkin, Adam P Keller, Nancy P Grigoriev, Igor V Louise Glass, N Louise |
author_facet | Skerker, Jeffrey M Pianalto, Kaila M Mondo, Stephen J Yang, Kunlong Arkin, Adam P Keller, Nancy P Grigoriev, Igor V Louise Glass, N Louise |
author_sort | Skerker, Jeffrey M |
collection | PubMed |
description | Aspergillus flavus is an opportunistic pathogen of crops, including peanuts and maize, and is the second leading cause of aspergillosis in immunocompromised patients. A. flavus is also a major producer of the mycotoxin, aflatoxin, a potent carcinogen, which results in significant crop losses annually. The A. flavus isolate NRRL 3357 was originally isolated from peanut and has been used as a model organism for understanding the regulation and production of secondary metabolites, such as aflatoxin. A draft genome of NRRL 3357 was previously constructed, enabling the development of molecular tools and for understanding population biology of this particular species. Here, we describe an updated, near complete, telomere-to-telomere assembly and re-annotation of the eight chromosomes of A. flavus NRRL 3357 genome, accomplished via long-read PacBio and Oxford Nanopore technologies combined with Illumina short-read sequencing. A total of 13,715 protein-coding genes were predicted. Using RNA-seq data, a significant improvement was achieved in predicted 5’ and 3’ untranslated regions, which were incorporated into the new gene models. |
format | Online Article Text |
id | pubmed-8496237 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-84962372021-10-07 Chromosome assembled and annotated genome sequence of Aspergillus flavus NRRL 3357 Skerker, Jeffrey M Pianalto, Kaila M Mondo, Stephen J Yang, Kunlong Arkin, Adam P Keller, Nancy P Grigoriev, Igor V Louise Glass, N Louise G3 (Bethesda) Genome Report Aspergillus flavus is an opportunistic pathogen of crops, including peanuts and maize, and is the second leading cause of aspergillosis in immunocompromised patients. A. flavus is also a major producer of the mycotoxin, aflatoxin, a potent carcinogen, which results in significant crop losses annually. The A. flavus isolate NRRL 3357 was originally isolated from peanut and has been used as a model organism for understanding the regulation and production of secondary metabolites, such as aflatoxin. A draft genome of NRRL 3357 was previously constructed, enabling the development of molecular tools and for understanding population biology of this particular species. Here, we describe an updated, near complete, telomere-to-telomere assembly and re-annotation of the eight chromosomes of A. flavus NRRL 3357 genome, accomplished via long-read PacBio and Oxford Nanopore technologies combined with Illumina short-read sequencing. A total of 13,715 protein-coding genes were predicted. Using RNA-seq data, a significant improvement was achieved in predicted 5’ and 3’ untranslated regions, which were incorporated into the new gene models. Oxford University Press 2021-06-26 /pmc/articles/PMC8496237/ /pubmed/34849826 http://dx.doi.org/10.1093/g3journal/jkab213 Text en © The Author(s) 2021. Published by Oxford University Press on behalf of Genetics Society of America. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Genome Report Skerker, Jeffrey M Pianalto, Kaila M Mondo, Stephen J Yang, Kunlong Arkin, Adam P Keller, Nancy P Grigoriev, Igor V Louise Glass, N Louise Chromosome assembled and annotated genome sequence of Aspergillus flavus NRRL 3357 |
title | Chromosome assembled and annotated genome sequence of Aspergillus flavus NRRL 3357 |
title_full | Chromosome assembled and annotated genome sequence of Aspergillus flavus NRRL 3357 |
title_fullStr | Chromosome assembled and annotated genome sequence of Aspergillus flavus NRRL 3357 |
title_full_unstemmed | Chromosome assembled and annotated genome sequence of Aspergillus flavus NRRL 3357 |
title_short | Chromosome assembled and annotated genome sequence of Aspergillus flavus NRRL 3357 |
title_sort | chromosome assembled and annotated genome sequence of aspergillus flavus nrrl 3357 |
topic | Genome Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8496237/ https://www.ncbi.nlm.nih.gov/pubmed/34849826 http://dx.doi.org/10.1093/g3journal/jkab213 |
work_keys_str_mv | AT skerkerjeffreym chromosomeassembledandannotatedgenomesequenceofaspergillusflavusnrrl3357 AT pianaltokailam chromosomeassembledandannotatedgenomesequenceofaspergillusflavusnrrl3357 AT mondostephenj chromosomeassembledandannotatedgenomesequenceofaspergillusflavusnrrl3357 AT yangkunlong chromosomeassembledandannotatedgenomesequenceofaspergillusflavusnrrl3357 AT arkinadamp chromosomeassembledandannotatedgenomesequenceofaspergillusflavusnrrl3357 AT kellernancyp chromosomeassembledandannotatedgenomesequenceofaspergillusflavusnrrl3357 AT grigorievigorv chromosomeassembledandannotatedgenomesequenceofaspergillusflavusnrrl3357 AT louiseglassnlouise chromosomeassembledandannotatedgenomesequenceofaspergillusflavusnrrl3357 |