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Genome assemblies of three closely related leaf beetle species (Galerucella spp.)
Galerucella (Coleoptera: Chrysomelidae) is a leaf beetle genus that has been extensively used for ecological and evolutionary studies. It has also been used as biological control agent against invading purple loosestrife in North America, with large effects on biodiversity. Here, we report genome as...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8496278/ https://www.ncbi.nlm.nih.gov/pubmed/34849825 http://dx.doi.org/10.1093/g3journal/jkab214 |
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author | Yang, Xuyue Slotte, Tanja Dainat, Jacques Hambäck, Peter A |
author_facet | Yang, Xuyue Slotte, Tanja Dainat, Jacques Hambäck, Peter A |
author_sort | Yang, Xuyue |
collection | PubMed |
description | Galerucella (Coleoptera: Chrysomelidae) is a leaf beetle genus that has been extensively used for ecological and evolutionary studies. It has also been used as biological control agent against invading purple loosestrife in North America, with large effects on biodiversity. Here, we report genome assembly and annotation of three closely related Galerucella species: G. calmariensis, G. pusilla, and G. tenella. The three assemblies have a genome size ranging from 460 to 588 Mbp, with N50 from 31,588 to 79,674 kbp, containing 29,202 to 40,929 scaffolds. Using an ab initio evidence-driven approach, 30,302 to 33,794 protein-coding genes were identified and functionally annotated. These draft genomes will contribute to the understanding of host-parasitoid interactions, evolutionary comparisons of leaf beetle species and future population genomics studies. |
format | Online Article Text |
id | pubmed-8496278 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-84962782021-10-07 Genome assemblies of three closely related leaf beetle species (Galerucella spp.) Yang, Xuyue Slotte, Tanja Dainat, Jacques Hambäck, Peter A G3 (Bethesda) Genome Report Galerucella (Coleoptera: Chrysomelidae) is a leaf beetle genus that has been extensively used for ecological and evolutionary studies. It has also been used as biological control agent against invading purple loosestrife in North America, with large effects on biodiversity. Here, we report genome assembly and annotation of three closely related Galerucella species: G. calmariensis, G. pusilla, and G. tenella. The three assemblies have a genome size ranging from 460 to 588 Mbp, with N50 from 31,588 to 79,674 kbp, containing 29,202 to 40,929 scaffolds. Using an ab initio evidence-driven approach, 30,302 to 33,794 protein-coding genes were identified and functionally annotated. These draft genomes will contribute to the understanding of host-parasitoid interactions, evolutionary comparisons of leaf beetle species and future population genomics studies. Oxford University Press 2021-06-22 /pmc/articles/PMC8496278/ /pubmed/34849825 http://dx.doi.org/10.1093/g3journal/jkab214 Text en © The Author(s) 2021. Published by Oxford University Press on behalf of Genetics Society of America. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Genome Report Yang, Xuyue Slotte, Tanja Dainat, Jacques Hambäck, Peter A Genome assemblies of three closely related leaf beetle species (Galerucella spp.) |
title | Genome assemblies of three closely related leaf beetle species (Galerucella spp.) |
title_full | Genome assemblies of three closely related leaf beetle species (Galerucella spp.) |
title_fullStr | Genome assemblies of three closely related leaf beetle species (Galerucella spp.) |
title_full_unstemmed | Genome assemblies of three closely related leaf beetle species (Galerucella spp.) |
title_short | Genome assemblies of three closely related leaf beetle species (Galerucella spp.) |
title_sort | genome assemblies of three closely related leaf beetle species (galerucella spp.) |
topic | Genome Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8496278/ https://www.ncbi.nlm.nih.gov/pubmed/34849825 http://dx.doi.org/10.1093/g3journal/jkab214 |
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