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Genome assemblies of three closely related leaf beetle species (Galerucella spp.)

Galerucella (Coleoptera: Chrysomelidae) is a leaf beetle genus that has been extensively used for ecological and evolutionary studies. It has also been used as biological control agent against invading purple loosestrife in North America, with large effects on biodiversity. Here, we report genome as...

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Autores principales: Yang, Xuyue, Slotte, Tanja, Dainat, Jacques, Hambäck, Peter A
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8496278/
https://www.ncbi.nlm.nih.gov/pubmed/34849825
http://dx.doi.org/10.1093/g3journal/jkab214
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author Yang, Xuyue
Slotte, Tanja
Dainat, Jacques
Hambäck, Peter A
author_facet Yang, Xuyue
Slotte, Tanja
Dainat, Jacques
Hambäck, Peter A
author_sort Yang, Xuyue
collection PubMed
description Galerucella (Coleoptera: Chrysomelidae) is a leaf beetle genus that has been extensively used for ecological and evolutionary studies. It has also been used as biological control agent against invading purple loosestrife in North America, with large effects on biodiversity. Here, we report genome assembly and annotation of three closely related Galerucella species: G. calmariensis, G. pusilla, and G. tenella. The three assemblies have a genome size ranging from 460 to 588 Mbp, with N50 from 31,588 to 79,674 kbp, containing 29,202 to 40,929 scaffolds. Using an ab initio evidence-driven approach, 30,302 to 33,794 protein-coding genes were identified and functionally annotated. These draft genomes will contribute to the understanding of host-parasitoid interactions, evolutionary comparisons of leaf beetle species and future population genomics studies.
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spelling pubmed-84962782021-10-07 Genome assemblies of three closely related leaf beetle species (Galerucella spp.) Yang, Xuyue Slotte, Tanja Dainat, Jacques Hambäck, Peter A G3 (Bethesda) Genome Report Galerucella (Coleoptera: Chrysomelidae) is a leaf beetle genus that has been extensively used for ecological and evolutionary studies. It has also been used as biological control agent against invading purple loosestrife in North America, with large effects on biodiversity. Here, we report genome assembly and annotation of three closely related Galerucella species: G. calmariensis, G. pusilla, and G. tenella. The three assemblies have a genome size ranging from 460 to 588 Mbp, with N50 from 31,588 to 79,674 kbp, containing 29,202 to 40,929 scaffolds. Using an ab initio evidence-driven approach, 30,302 to 33,794 protein-coding genes were identified and functionally annotated. These draft genomes will contribute to the understanding of host-parasitoid interactions, evolutionary comparisons of leaf beetle species and future population genomics studies. Oxford University Press 2021-06-22 /pmc/articles/PMC8496278/ /pubmed/34849825 http://dx.doi.org/10.1093/g3journal/jkab214 Text en © The Author(s) 2021. Published by Oxford University Press on behalf of Genetics Society of America. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Genome Report
Yang, Xuyue
Slotte, Tanja
Dainat, Jacques
Hambäck, Peter A
Genome assemblies of three closely related leaf beetle species (Galerucella spp.)
title Genome assemblies of three closely related leaf beetle species (Galerucella spp.)
title_full Genome assemblies of three closely related leaf beetle species (Galerucella spp.)
title_fullStr Genome assemblies of three closely related leaf beetle species (Galerucella spp.)
title_full_unstemmed Genome assemblies of three closely related leaf beetle species (Galerucella spp.)
title_short Genome assemblies of three closely related leaf beetle species (Galerucella spp.)
title_sort genome assemblies of three closely related leaf beetle species (galerucella spp.)
topic Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8496278/
https://www.ncbi.nlm.nih.gov/pubmed/34849825
http://dx.doi.org/10.1093/g3journal/jkab214
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