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The correlation of WDR76 expression with survival outcomes and immune infiltrates in lung adenocarcinoma

BACKGROUND: WD repeat domain 76 (WDR76) is a predicted member of the WD40-repeat-containing domain superfamily and possibly involves in various biological processes, but its function in cancers is poorly characterized. This study aimed to evaluate the role of WDR76 in the prognosis and immune infilt...

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Autores principales: Fang, Likui, Yu, Guocan, Yu, Wenfeng, Chen, Gang, Ye, Bo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8496460/
https://www.ncbi.nlm.nih.gov/pubmed/34707943
http://dx.doi.org/10.7717/peerj.12277
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author Fang, Likui
Yu, Guocan
Yu, Wenfeng
Chen, Gang
Ye, Bo
author_facet Fang, Likui
Yu, Guocan
Yu, Wenfeng
Chen, Gang
Ye, Bo
author_sort Fang, Likui
collection PubMed
description BACKGROUND: WD repeat domain 76 (WDR76) is a predicted member of the WD40-repeat-containing domain superfamily and possibly involves in various biological processes, but its function in cancers is poorly characterized. This study aimed to evaluate the role of WDR76 in the prognosis and immune infiltrates of lung adenocarcinoma (LUAD). METHODS: WDR76 expressions in LUAD tissues and normal tissues were primarily compared by The Cancer Genome Atlas (TCGA) database, and were validated in cohorts from Gene Expression Omnibus (GEO) database. The associations between WDR76 expression and clinicopathologic characteristics were analyzed. Kaplan–Meier and Cox regression analyses were performed to determine the impact of WDR76 expression on survival outcomes. The protein interaction network of WDR76 was built using STRING website. TIMER and GEPIA databases were used to investigate the correlation between WDR76 expression and immune infiltrates. RESULTS: WDR76 expression was elevated in LUAD (P < 0.001) and high WDR76 expression was associated with advanced N stage, M stage and pathologic stage. Expectedly, high WDR76 expression significantly correlated with poor survival outcomes and was the independent risk factor for overall survival (OS) (HR 1.468, 95% CI [1.031–2.089], P = 0.033) and disease specific survival (DSS) (HR 1.764, 95% CI [1.095–2.842], P = 0.020). DDB1 and LSH were the important proteins interacting with WDR76. WDR76 expression correlated with CD8+ T cells presence and was also positively associated with levels of inhibitory receptors. CONCLUSION: WDR76 expression was involved in the regulation of immune infiltrates and had predictive value for prognosis in LUAD.
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spelling pubmed-84964602021-10-26 The correlation of WDR76 expression with survival outcomes and immune infiltrates in lung adenocarcinoma Fang, Likui Yu, Guocan Yu, Wenfeng Chen, Gang Ye, Bo PeerJ Bioinformatics BACKGROUND: WD repeat domain 76 (WDR76) is a predicted member of the WD40-repeat-containing domain superfamily and possibly involves in various biological processes, but its function in cancers is poorly characterized. This study aimed to evaluate the role of WDR76 in the prognosis and immune infiltrates of lung adenocarcinoma (LUAD). METHODS: WDR76 expressions in LUAD tissues and normal tissues were primarily compared by The Cancer Genome Atlas (TCGA) database, and were validated in cohorts from Gene Expression Omnibus (GEO) database. The associations between WDR76 expression and clinicopathologic characteristics were analyzed. Kaplan–Meier and Cox regression analyses were performed to determine the impact of WDR76 expression on survival outcomes. The protein interaction network of WDR76 was built using STRING website. TIMER and GEPIA databases were used to investigate the correlation between WDR76 expression and immune infiltrates. RESULTS: WDR76 expression was elevated in LUAD (P < 0.001) and high WDR76 expression was associated with advanced N stage, M stage and pathologic stage. Expectedly, high WDR76 expression significantly correlated with poor survival outcomes and was the independent risk factor for overall survival (OS) (HR 1.468, 95% CI [1.031–2.089], P = 0.033) and disease specific survival (DSS) (HR 1.764, 95% CI [1.095–2.842], P = 0.020). DDB1 and LSH were the important proteins interacting with WDR76. WDR76 expression correlated with CD8+ T cells presence and was also positively associated with levels of inhibitory receptors. CONCLUSION: WDR76 expression was involved in the regulation of immune infiltrates and had predictive value for prognosis in LUAD. PeerJ Inc. 2021-10-04 /pmc/articles/PMC8496460/ /pubmed/34707943 http://dx.doi.org/10.7717/peerj.12277 Text en ©2021 Fang et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.
spellingShingle Bioinformatics
Fang, Likui
Yu, Guocan
Yu, Wenfeng
Chen, Gang
Ye, Bo
The correlation of WDR76 expression with survival outcomes and immune infiltrates in lung adenocarcinoma
title The correlation of WDR76 expression with survival outcomes and immune infiltrates in lung adenocarcinoma
title_full The correlation of WDR76 expression with survival outcomes and immune infiltrates in lung adenocarcinoma
title_fullStr The correlation of WDR76 expression with survival outcomes and immune infiltrates in lung adenocarcinoma
title_full_unstemmed The correlation of WDR76 expression with survival outcomes and immune infiltrates in lung adenocarcinoma
title_short The correlation of WDR76 expression with survival outcomes and immune infiltrates in lung adenocarcinoma
title_sort correlation of wdr76 expression with survival outcomes and immune infiltrates in lung adenocarcinoma
topic Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8496460/
https://www.ncbi.nlm.nih.gov/pubmed/34707943
http://dx.doi.org/10.7717/peerj.12277
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