Fast parallel construction of variable-length Markov chains

BACKGROUND: Alignment-free methods are a popular approach for comparing biological sequences, including complete genomes. The methods range from probability distributions of sequence composition to first and higher-order Markov chains, where a k-th order Markov chain over DNA has [Formula: see text]...

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Detalles Bibliográficos
Autores principales: Gustafsson, Joel, Norberg, Peter, Qvick-Wester, Jan R., Schliep, Alexander
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2021
Materias:
Software
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8501649/
https://www.ncbi.nlm.nih.gov/pubmed/34627154
http://dx.doi.org/10.1186/s12859-021-04387-y

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8501649/
https://www.ncbi.nlm.nih.gov/pubmed/34627154
http://dx.doi.org/10.1186/s12859-021-04387-y

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