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Fast parallel construction of variable-length Markov chains

BACKGROUND: Alignment-free methods are a popular approach for comparing biological sequences, including complete genomes. The methods range from probability distributions of sequence composition to first and higher-order Markov chains, where a k-th order Markov chain over DNA has [Formula: see text]...

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Detalles Bibliográficos
Autores principales:	Gustafsson, Joel, Norberg, Peter, Qvick-Wester, Jan R., Schliep, Alexander
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2021
Materias:	Software
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8501649/ https://www.ncbi.nlm.nih.gov/pubmed/34627154 http://dx.doi.org/10.1186/s12859-021-04387-y

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