De novo assembly and annotation of the mangrove cricket genome

OBJECTIVES: The mangrove cricket, Apteronemobius asahinai, shows endogenous activity rhythms that synchronize with the tidal cycle (i.e., a free-running rhythm with a period of ~ 12.4 h [the circatidal rhythm]). Little is known about the molecular mechanisms underlying the circatidal rhythm. We pres...

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Autores principales: Satoh, Aya, Takasu, Miwako, Yano, Kentaro, Terai, Yohey
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2021
Materias:
Data Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8502352/
https://www.ncbi.nlm.nih.gov/pubmed/34627387
http://dx.doi.org/10.1186/s13104-021-05798-z
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author Satoh, Aya
Takasu, Miwako
Yano, Kentaro
Terai, Yohey
author_facet Satoh, Aya
Takasu, Miwako
Yano, Kentaro
Terai, Yohey
author_sort Satoh, Aya
collection PubMed
description OBJECTIVES: The mangrove cricket, Apteronemobius asahinai, shows endogenous activity rhythms that synchronize with the tidal cycle (i.e., a free-running rhythm with a period of ~ 12.4 h [the circatidal rhythm]). Little is known about the molecular mechanisms underlying the circatidal rhythm. We present the draft genome of the mangrove cricket to facilitate future molecular studies of the molecular mechanisms behind this rhythm. DATA DESCRIPTION: The draft genome contains 151,060 scaffolds with a total length of 1.68 Gb (N50: 27 kb) and 92% BUSCO completeness. We obtained 28,831 predicted genes, of which 19,896 (69%) were successfully annotated using at least one of two databases (UniProtKB/SwissProt database and Pfam database).
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spelling pubmed-85023522021-10-20 De novo assembly and annotation of the mangrove cricket genome Satoh, Aya Takasu, Miwako Yano, Kentaro Terai, Yohey BMC Res Notes Data Note OBJECTIVES: The mangrove cricket, Apteronemobius asahinai, shows endogenous activity rhythms that synchronize with the tidal cycle (i.e., a free-running rhythm with a period of ~ 12.4 h [the circatidal rhythm]). Little is known about the molecular mechanisms underlying the circatidal rhythm. We present the draft genome of the mangrove cricket to facilitate future molecular studies of the molecular mechanisms behind this rhythm. DATA DESCRIPTION: The draft genome contains 151,060 scaffolds with a total length of 1.68 Gb (N50: 27 kb) and 92% BUSCO completeness. We obtained 28,831 predicted genes, of which 19,896 (69%) were successfully annotated using at least one of two databases (UniProtKB/SwissProt database and Pfam database). BioMed Central 2021-10-09 /pmc/articles/PMC8502352/ /pubmed/34627387 http://dx.doi.org/10.1186/s13104-021-05798-z Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Data Note
Satoh, Aya
Takasu, Miwako
Yano, Kentaro
Terai, Yohey
De novo assembly and annotation of the mangrove cricket genome
title De novo assembly and annotation of the mangrove cricket genome
title_full De novo assembly and annotation of the mangrove cricket genome
title_fullStr De novo assembly and annotation of the mangrove cricket genome
title_full_unstemmed De novo assembly and annotation of the mangrove cricket genome
title_short De novo assembly and annotation of the mangrove cricket genome
title_sort de novo assembly and annotation of the mangrove cricket genome
topic Data Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8502352/
https://www.ncbi.nlm.nih.gov/pubmed/34627387
http://dx.doi.org/10.1186/s13104-021-05798-z
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AT teraiyohey denovoassemblyandannotationofthemangrovecricketgenome

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