Cargando…
Bioconductor toolchain for reproducible bioinformatics pipelines using Rcwl and RcwlPipelines
SUMMARY: The Common Workflow Language (CWL) is used to provide portable and reproducible data analysis workflows across different tools and computing environments. We have developed Rcwl, an R interface to CWL, to provide easier development, use and maintenance of CWL pipelines from within R. We hav...
Autores principales: | Hu, Qiang, Hutson, Alan, Liu, Song, Morgan, Martin, Liu, Qian |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8504628/ https://www.ncbi.nlm.nih.gov/pubmed/33772584 http://dx.doi.org/10.1093/bioinformatics/btab208 |
Ejemplares similares
-
scPipe: an extended preprocessing pipeline for comprehensive single-cell ATAC-Seq data integration in R/Bioconductor
por: Amarasinghe, Shanika L, et al.
Publicado: (2023) -
PamgeneAnalyzeR: open and reproducible pipeline for kinase profiling
por: Bekkar, Amel, et al.
Publicado: (2020) -
maplet: an extensible R toolbox for modular and reproducible metabolomics pipelines
por: Chetnik, Kelsey, et al.
Publicado: (2021) -
MAGpy: a reproducible pipeline for the downstream analysis of metagenome-assembled genomes (MAGs)
por: Stewart, Robert D, et al.
Publicado: (2019) -
Scdrake: a reproducible and scalable pipeline for scRNA-seq data analysis
por: Kubovčiak, Jan, et al.
Publicado: (2023)