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Comprehensive Analysis of Clinical Significance, Immune Infiltration and Biological Role of m(6)A Regulators in Early-Stage Lung Adenocarcinoma

Recent publications have revealed that N6-methyladenosine (m(6)A) modification is critically involved in tumorigenesis and metastasis. However, the correlation of m(6)A modification and immune infiltration in early-stage lung adenocarcinoma (LUAD) is still uncertain. We performed NMF clustering base...

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Autores principales: Zhou, Bolun, Gao, Shugeng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8505809/
https://www.ncbi.nlm.nih.gov/pubmed/34650549
http://dx.doi.org/10.3389/fimmu.2021.698236
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author Zhou, Bolun
Gao, Shugeng
author_facet Zhou, Bolun
Gao, Shugeng
author_sort Zhou, Bolun
collection PubMed
description Recent publications have revealed that N6-methyladenosine (m(6)A) modification is critically involved in tumorigenesis and metastasis. However, the correlation of m(6)A modification and immune infiltration in early-stage lung adenocarcinoma (LUAD) is still uncertain. We performed NMF clustering based on 23 m(6)A regulators and identify three distinct m(6)A clusters and three m(6)A related genes clusters (m(6)A cluster-R) in early-stage LUAD. The immune infiltrating levels were calculated using CIBERSORT, MCPcounter and ssGSEA algorithms. And we established the m(6)A-predictive score to quantify m(6)A modified phenotypes and predict immunotherapeutic responses. Based on the TME characteristics, different immune profiles were also identified among three m(6)A gene-related clusters. And the m(6)A-R-C2 was related to a favorable overall survival (OS), whereas m(6)A-R-C3 had unfavorable overall survival. The m(6)A-predictive score was built according to the expression levels of m(6)A-related genes, and patients could be stratified into subgroups with low/high scores. Patients with high scores had poor overall survival, enhanced immune infiltration, high tumor mutation burden and increased level of somatic mutation. Besides, patients with high scores had unfavorable overall survival in the anti-PD-1 cohort, whereas the overall survival of high-score patients was better in the adoptive T cell therapy cohort. Our work highlights that m(6)A modification is closely related to immune infiltration in early-stage LUAD, which also contributes to the development of more effective immunotherapy strategies.
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spelling pubmed-85058092021-10-13 Comprehensive Analysis of Clinical Significance, Immune Infiltration and Biological Role of m(6)A Regulators in Early-Stage Lung Adenocarcinoma Zhou, Bolun Gao, Shugeng Front Immunol Immunology Recent publications have revealed that N6-methyladenosine (m(6)A) modification is critically involved in tumorigenesis and metastasis. However, the correlation of m(6)A modification and immune infiltration in early-stage lung adenocarcinoma (LUAD) is still uncertain. We performed NMF clustering based on 23 m(6)A regulators and identify three distinct m(6)A clusters and three m(6)A related genes clusters (m(6)A cluster-R) in early-stage LUAD. The immune infiltrating levels were calculated using CIBERSORT, MCPcounter and ssGSEA algorithms. And we established the m(6)A-predictive score to quantify m(6)A modified phenotypes and predict immunotherapeutic responses. Based on the TME characteristics, different immune profiles were also identified among three m(6)A gene-related clusters. And the m(6)A-R-C2 was related to a favorable overall survival (OS), whereas m(6)A-R-C3 had unfavorable overall survival. The m(6)A-predictive score was built according to the expression levels of m(6)A-related genes, and patients could be stratified into subgroups with low/high scores. Patients with high scores had poor overall survival, enhanced immune infiltration, high tumor mutation burden and increased level of somatic mutation. Besides, patients with high scores had unfavorable overall survival in the anti-PD-1 cohort, whereas the overall survival of high-score patients was better in the adoptive T cell therapy cohort. Our work highlights that m(6)A modification is closely related to immune infiltration in early-stage LUAD, which also contributes to the development of more effective immunotherapy strategies. Frontiers Media S.A. 2021-09-28 /pmc/articles/PMC8505809/ /pubmed/34650549 http://dx.doi.org/10.3389/fimmu.2021.698236 Text en Copyright © 2021 Zhou and Gao https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Immunology
Zhou, Bolun
Gao, Shugeng
Comprehensive Analysis of Clinical Significance, Immune Infiltration and Biological Role of m(6)A Regulators in Early-Stage Lung Adenocarcinoma
title Comprehensive Analysis of Clinical Significance, Immune Infiltration and Biological Role of m(6)A Regulators in Early-Stage Lung Adenocarcinoma
title_full Comprehensive Analysis of Clinical Significance, Immune Infiltration and Biological Role of m(6)A Regulators in Early-Stage Lung Adenocarcinoma
title_fullStr Comprehensive Analysis of Clinical Significance, Immune Infiltration and Biological Role of m(6)A Regulators in Early-Stage Lung Adenocarcinoma
title_full_unstemmed Comprehensive Analysis of Clinical Significance, Immune Infiltration and Biological Role of m(6)A Regulators in Early-Stage Lung Adenocarcinoma
title_short Comprehensive Analysis of Clinical Significance, Immune Infiltration and Biological Role of m(6)A Regulators in Early-Stage Lung Adenocarcinoma
title_sort comprehensive analysis of clinical significance, immune infiltration and biological role of m(6)a regulators in early-stage lung adenocarcinoma
topic Immunology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8505809/
https://www.ncbi.nlm.nih.gov/pubmed/34650549
http://dx.doi.org/10.3389/fimmu.2021.698236
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