Cargando…

Dipetidyl peptidase-4 and transferrin receptor serve as prognostic biomarkers for acute myeloid leukemia

BACKGROUND: Acute myeloid leukemia (AML) is the most common hematological malignancy in adult patients. Ferroptosis-related signatures have been shown to act as regulators of the progression of multiple cancer types, but the role of ferroptosis in AML remains to be elucidated. We performed the prese...

Descripción completa

Detalles Bibliográficos
Autores principales: Wei, Jie, Nai, Guan Ye, Dai, Yi, Huang, Xun Jun, Xiong, Ming Yue, Yao, Xiang You, Huang, Zhi Ning, Li, Si Nian, Zhou, Wei Jie, Huang, Yan, Cheng, Peng, Deng, Dong Hong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: AME Publishing Company 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8506534/
https://www.ncbi.nlm.nih.gov/pubmed/34733933
http://dx.doi.org/10.21037/atm-21-3368
_version_ 1784581720707694592
author Wei, Jie
Nai, Guan Ye
Dai, Yi
Huang, Xun Jun
Xiong, Ming Yue
Yao, Xiang You
Huang, Zhi Ning
Li, Si Nian
Zhou, Wei Jie
Huang, Yan
Cheng, Peng
Deng, Dong Hong
author_facet Wei, Jie
Nai, Guan Ye
Dai, Yi
Huang, Xun Jun
Xiong, Ming Yue
Yao, Xiang You
Huang, Zhi Ning
Li, Si Nian
Zhou, Wei Jie
Huang, Yan
Cheng, Peng
Deng, Dong Hong
author_sort Wei, Jie
collection PubMed
description BACKGROUND: Acute myeloid leukemia (AML) is the most common hematological malignancy in adult patients. Ferroptosis-related signatures have been shown to act as regulators of the progression of multiple cancer types, but the role of ferroptosis in AML remains to be elucidated. We performed the present study to preliminarily investigate the roles of ferroptosis-related genes (FRGs) in AML. METHODS: The transcriptome data of AML patients was downloaded from The Cancer Genome Atlas (TCGA) and the transcriptome data of normal samples was obtained from the Genotype-Tissue Expression (GTEx) database. FRGs were selected via public articles. Expression levels of FRGs between AML and normal samples were analyzed. The prognostic model based on FRGs was constructed via lasso regression. The expression levels and prognostic role of FRGs were identified from the risk model. We also performed validation experiments to verify the expression levels of the final selected genes via immunohistochemistry, polymerase chain reaction (PCR), and RNA-seq. Finally, we explored the associations between immune infiltration, drug sensitivity, and the selected FRGs. RESULTS: The transcriptome data of 151 AML samples were retrieved from TCGA and 70 bone marrow normal samples were retrieved from the GTEx database. Additionally, 23 FRGs were collected from the published articles. There were 22 differentially expressed FRGs, and among them, dipetidyl peptidase-4 (DPP4) (P= 0.011, HR =1.504), GPX4 (P=0.055, HR =1.569), LPCAT3 (P<0.001, HR =2.243), SLC7A11 (P=0.012, HR =2.243), and transferrin receptor (TFRC) (P=0.029, 0.774) had a significant influence on the prognosis of AML patients via lasso regression. The area under the curve (AUC) values of the 1-, 3-, and 5-year receiver operating characteristic (ROC) curves of the FRG signatures indicated that this model is novel and effective method for predicting the prognosis of AML patients. DPP4 (P<0.001) was overexpressed while LPCAT3 (P<0.001), TFRC (P<0.001), GPX4 (P<0.001), and SLC7A11 (P<0.001) were downregulated, further validation experiment results indicated that DPP4 was significantly downregulated but TFRC was upregulated in AML samples. Dysregulation of DPP4 and TFRC influence numbers of chemotherapy regimens sensitivity. CONCLUSIONS: DPP4 and TFRC act as biomarkers for predicting and diagnosing AML, and their expression levels also have significant correlations with drug resistance in AML.
format Online
Article
Text
id pubmed-8506534
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher AME Publishing Company
record_format MEDLINE/PubMed
spelling pubmed-85065342021-11-02 Dipetidyl peptidase-4 and transferrin receptor serve as prognostic biomarkers for acute myeloid leukemia Wei, Jie Nai, Guan Ye Dai, Yi Huang, Xun Jun Xiong, Ming Yue Yao, Xiang You Huang, Zhi Ning Li, Si Nian Zhou, Wei Jie Huang, Yan Cheng, Peng Deng, Dong Hong Ann Transl Med Original Article BACKGROUND: Acute myeloid leukemia (AML) is the most common hematological malignancy in adult patients. Ferroptosis-related signatures have been shown to act as regulators of the progression of multiple cancer types, but the role of ferroptosis in AML remains to be elucidated. We performed the present study to preliminarily investigate the roles of ferroptosis-related genes (FRGs) in AML. METHODS: The transcriptome data of AML patients was downloaded from The Cancer Genome Atlas (TCGA) and the transcriptome data of normal samples was obtained from the Genotype-Tissue Expression (GTEx) database. FRGs were selected via public articles. Expression levels of FRGs between AML and normal samples were analyzed. The prognostic model based on FRGs was constructed via lasso regression. The expression levels and prognostic role of FRGs were identified from the risk model. We also performed validation experiments to verify the expression levels of the final selected genes via immunohistochemistry, polymerase chain reaction (PCR), and RNA-seq. Finally, we explored the associations between immune infiltration, drug sensitivity, and the selected FRGs. RESULTS: The transcriptome data of 151 AML samples were retrieved from TCGA and 70 bone marrow normal samples were retrieved from the GTEx database. Additionally, 23 FRGs were collected from the published articles. There were 22 differentially expressed FRGs, and among them, dipetidyl peptidase-4 (DPP4) (P= 0.011, HR =1.504), GPX4 (P=0.055, HR =1.569), LPCAT3 (P<0.001, HR =2.243), SLC7A11 (P=0.012, HR =2.243), and transferrin receptor (TFRC) (P=0.029, 0.774) had a significant influence on the prognosis of AML patients via lasso regression. The area under the curve (AUC) values of the 1-, 3-, and 5-year receiver operating characteristic (ROC) curves of the FRG signatures indicated that this model is novel and effective method for predicting the prognosis of AML patients. DPP4 (P<0.001) was overexpressed while LPCAT3 (P<0.001), TFRC (P<0.001), GPX4 (P<0.001), and SLC7A11 (P<0.001) were downregulated, further validation experiment results indicated that DPP4 was significantly downregulated but TFRC was upregulated in AML samples. Dysregulation of DPP4 and TFRC influence numbers of chemotherapy regimens sensitivity. CONCLUSIONS: DPP4 and TFRC act as biomarkers for predicting and diagnosing AML, and their expression levels also have significant correlations with drug resistance in AML. AME Publishing Company 2021-09 /pmc/articles/PMC8506534/ /pubmed/34733933 http://dx.doi.org/10.21037/atm-21-3368 Text en 2021 Annals of Translational Medicine. All rights reserved. https://creativecommons.org/licenses/by-nc-nd/4.0/Open Access Statement: This is an Open Access article distributed in accordance with the Creative Commons Attribution-NonCommercial-NoDerivs 4.0 International License (CC BY-NC-ND 4.0), which permits the non-commercial replication and distribution of the article with the strict proviso that no changes or edits are made and the original work is properly cited (including links to both the formal publication through the relevant DOI and the license). See: https://creativecommons.org/licenses/by-nc-nd/4.0 (https://creativecommons.org/licenses/by-nc-nd/4.0/) .
spellingShingle Original Article
Wei, Jie
Nai, Guan Ye
Dai, Yi
Huang, Xun Jun
Xiong, Ming Yue
Yao, Xiang You
Huang, Zhi Ning
Li, Si Nian
Zhou, Wei Jie
Huang, Yan
Cheng, Peng
Deng, Dong Hong
Dipetidyl peptidase-4 and transferrin receptor serve as prognostic biomarkers for acute myeloid leukemia
title Dipetidyl peptidase-4 and transferrin receptor serve as prognostic biomarkers for acute myeloid leukemia
title_full Dipetidyl peptidase-4 and transferrin receptor serve as prognostic biomarkers for acute myeloid leukemia
title_fullStr Dipetidyl peptidase-4 and transferrin receptor serve as prognostic biomarkers for acute myeloid leukemia
title_full_unstemmed Dipetidyl peptidase-4 and transferrin receptor serve as prognostic biomarkers for acute myeloid leukemia
title_short Dipetidyl peptidase-4 and transferrin receptor serve as prognostic biomarkers for acute myeloid leukemia
title_sort dipetidyl peptidase-4 and transferrin receptor serve as prognostic biomarkers for acute myeloid leukemia
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8506534/
https://www.ncbi.nlm.nih.gov/pubmed/34733933
http://dx.doi.org/10.21037/atm-21-3368
work_keys_str_mv AT weijie dipetidylpeptidase4andtransferrinreceptorserveasprognosticbiomarkersforacutemyeloidleukemia
AT naiguanye dipetidylpeptidase4andtransferrinreceptorserveasprognosticbiomarkersforacutemyeloidleukemia
AT daiyi dipetidylpeptidase4andtransferrinreceptorserveasprognosticbiomarkersforacutemyeloidleukemia
AT huangxunjun dipetidylpeptidase4andtransferrinreceptorserveasprognosticbiomarkersforacutemyeloidleukemia
AT xiongmingyue dipetidylpeptidase4andtransferrinreceptorserveasprognosticbiomarkersforacutemyeloidleukemia
AT yaoxiangyou dipetidylpeptidase4andtransferrinreceptorserveasprognosticbiomarkersforacutemyeloidleukemia
AT huangzhining dipetidylpeptidase4andtransferrinreceptorserveasprognosticbiomarkersforacutemyeloidleukemia
AT lisinian dipetidylpeptidase4andtransferrinreceptorserveasprognosticbiomarkersforacutemyeloidleukemia
AT zhouweijie dipetidylpeptidase4andtransferrinreceptorserveasprognosticbiomarkersforacutemyeloidleukemia
AT huangyan dipetidylpeptidase4andtransferrinreceptorserveasprognosticbiomarkersforacutemyeloidleukemia
AT chengpeng dipetidylpeptidase4andtransferrinreceptorserveasprognosticbiomarkersforacutemyeloidleukemia
AT dengdonghong dipetidylpeptidase4andtransferrinreceptorserveasprognosticbiomarkersforacutemyeloidleukemia