Cargando…

Roadmap on emerging concepts in the physical biology of bacterial biofilms: from surface sensing to community formation

Bacterial biofilms are communities of bacteria that exist as aggregates that can adhere to surfaces or be free-standing. This complex, social mode of cellular organization is fundamental to the physiology of microbes and often exhibits surprising behavior. Bacterial biofilms are more than the sum of...

Descripción completa

Detalles Bibliográficos
Autores principales: Wong, Gerard C L, Antani, Jyot D, Lele, Pushkar P, Chen, Jing, Nan, Beiyan, Kühn, Marco J, Persat, Alexandre, Bru, Jean-Louis, Høyland-Kroghsbo, Nina Molin, Siryaporn, Albert, Conrad, Jacinta C, Carrara, Francesco, Yawata, Yutaka, Stocker, Roman, Brun, Yves V, Whitfield, Gregory B, Lee, Calvin K, de Anda, Jaime, Schmidt, William C, Golestanian, Ramin, O’Toole, George A, Floyd, Kyle A, Yildiz, Fitnat H, Yang, Shuai, Jin, Fan, Toyofuku, Masanori, Eberl, Leo, Nomura, Nobuhiko, Zacharoff, Lori A, El-Naggar, Mohamed Y, Yalcin, Sibel Ebru, Malvankar, Nikhil S, Rojas-Andrade, Mauricio D, Hochbaum, Allon I, Yan, Jing, Stone, Howard A, Wingreen, Ned S, Bassler, Bonnie L, Wu, Yilin, Xu, Haoran, Drescher, Knut, Dunkel, Jörn
Formato: Online Artículo Texto
Lenguaje:English
Publicado: 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8506656/
https://www.ncbi.nlm.nih.gov/pubmed/33462162
http://dx.doi.org/10.1088/1478-3975/abdc0e
_version_ 1784581736632418304
author Wong, Gerard C L
Antani, Jyot D
Lele, Pushkar P
Chen, Jing
Nan, Beiyan
Kühn, Marco J
Persat, Alexandre
Bru, Jean-Louis
Høyland-Kroghsbo, Nina Molin
Siryaporn, Albert
Conrad, Jacinta C
Carrara, Francesco
Yawata, Yutaka
Stocker, Roman
Brun, Yves V
Whitfield, Gregory B
Lee, Calvin K
de Anda, Jaime
Schmidt, William C
Golestanian, Ramin
O’Toole, George A
Floyd, Kyle A
Yildiz, Fitnat H
Yang, Shuai
Jin, Fan
Toyofuku, Masanori
Eberl, Leo
Nomura, Nobuhiko
Zacharoff, Lori A
El-Naggar, Mohamed Y
Yalcin, Sibel Ebru
Malvankar, Nikhil S
Rojas-Andrade, Mauricio D
Hochbaum, Allon I
Yan, Jing
Stone, Howard A
Wingreen, Ned S
Bassler, Bonnie L
Wu, Yilin
Xu, Haoran
Drescher, Knut
Dunkel, Jörn
author_facet Wong, Gerard C L
Antani, Jyot D
Lele, Pushkar P
Chen, Jing
Nan, Beiyan
Kühn, Marco J
Persat, Alexandre
Bru, Jean-Louis
Høyland-Kroghsbo, Nina Molin
Siryaporn, Albert
Conrad, Jacinta C
Carrara, Francesco
Yawata, Yutaka
Stocker, Roman
Brun, Yves V
Whitfield, Gregory B
Lee, Calvin K
de Anda, Jaime
Schmidt, William C
Golestanian, Ramin
O’Toole, George A
Floyd, Kyle A
Yildiz, Fitnat H
Yang, Shuai
Jin, Fan
Toyofuku, Masanori
Eberl, Leo
Nomura, Nobuhiko
Zacharoff, Lori A
El-Naggar, Mohamed Y
Yalcin, Sibel Ebru
Malvankar, Nikhil S
Rojas-Andrade, Mauricio D
Hochbaum, Allon I
Yan, Jing
Stone, Howard A
Wingreen, Ned S
Bassler, Bonnie L
Wu, Yilin
Xu, Haoran
Drescher, Knut
Dunkel, Jörn
author_sort Wong, Gerard C L
collection PubMed
description Bacterial biofilms are communities of bacteria that exist as aggregates that can adhere to surfaces or be free-standing. This complex, social mode of cellular organization is fundamental to the physiology of microbes and often exhibits surprising behavior. Bacterial biofilms are more than the sum of their parts: single-cell behavior has a complex relation to collective community behavior, in a manner perhaps cognate to the complex relation between atomic physics and condensed matter physics. Biofilm microbiology is a relatively young field by biology standards, but it has already attracted intense attention from physicists. Sometimes, this attention takes the form of seeing biofilms as inspiration for new physics. In this roadmap, we highlight the work of those who have taken the opposite strategy: we highlight the work of physicists and physical scientists who use physics to engage fundamental concepts in bacterial biofilm microbiology, including adhesion, sensing, motility, signaling, memory, energy flow, community formation and cooperativity. These contributions are juxtaposed with microbiologists who have made recent important discoveries on bacterial biofilms using state-of-the-art physical methods. The contributions to this roadmap exemplify how well physics and biology can be combined to achieve a new synthesis, rather than just a division of labor.
format Online
Article
Text
id pubmed-8506656
institution National Center for Biotechnology Information
language English
publishDate 2021
record_format MEDLINE/PubMed
spelling pubmed-85066562022-06-23 Roadmap on emerging concepts in the physical biology of bacterial biofilms: from surface sensing to community formation Wong, Gerard C L Antani, Jyot D Lele, Pushkar P Chen, Jing Nan, Beiyan Kühn, Marco J Persat, Alexandre Bru, Jean-Louis Høyland-Kroghsbo, Nina Molin Siryaporn, Albert Conrad, Jacinta C Carrara, Francesco Yawata, Yutaka Stocker, Roman Brun, Yves V Whitfield, Gregory B Lee, Calvin K de Anda, Jaime Schmidt, William C Golestanian, Ramin O’Toole, George A Floyd, Kyle A Yildiz, Fitnat H Yang, Shuai Jin, Fan Toyofuku, Masanori Eberl, Leo Nomura, Nobuhiko Zacharoff, Lori A El-Naggar, Mohamed Y Yalcin, Sibel Ebru Malvankar, Nikhil S Rojas-Andrade, Mauricio D Hochbaum, Allon I Yan, Jing Stone, Howard A Wingreen, Ned S Bassler, Bonnie L Wu, Yilin Xu, Haoran Drescher, Knut Dunkel, Jörn Phys Biol Article Bacterial biofilms are communities of bacteria that exist as aggregates that can adhere to surfaces or be free-standing. This complex, social mode of cellular organization is fundamental to the physiology of microbes and often exhibits surprising behavior. Bacterial biofilms are more than the sum of their parts: single-cell behavior has a complex relation to collective community behavior, in a manner perhaps cognate to the complex relation between atomic physics and condensed matter physics. Biofilm microbiology is a relatively young field by biology standards, but it has already attracted intense attention from physicists. Sometimes, this attention takes the form of seeing biofilms as inspiration for new physics. In this roadmap, we highlight the work of those who have taken the opposite strategy: we highlight the work of physicists and physical scientists who use physics to engage fundamental concepts in bacterial biofilm microbiology, including adhesion, sensing, motility, signaling, memory, energy flow, community formation and cooperativity. These contributions are juxtaposed with microbiologists who have made recent important discoveries on bacterial biofilms using state-of-the-art physical methods. The contributions to this roadmap exemplify how well physics and biology can be combined to achieve a new synthesis, rather than just a division of labor. 2021-06-23 /pmc/articles/PMC8506656/ /pubmed/33462162 http://dx.doi.org/10.1088/1478-3975/abdc0e Text en https://creativecommons.org/licenses/by/4.0/Original content from this work may be used under the terms of the Creative Commons Attribution 4.0 licence (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Wong, Gerard C L
Antani, Jyot D
Lele, Pushkar P
Chen, Jing
Nan, Beiyan
Kühn, Marco J
Persat, Alexandre
Bru, Jean-Louis
Høyland-Kroghsbo, Nina Molin
Siryaporn, Albert
Conrad, Jacinta C
Carrara, Francesco
Yawata, Yutaka
Stocker, Roman
Brun, Yves V
Whitfield, Gregory B
Lee, Calvin K
de Anda, Jaime
Schmidt, William C
Golestanian, Ramin
O’Toole, George A
Floyd, Kyle A
Yildiz, Fitnat H
Yang, Shuai
Jin, Fan
Toyofuku, Masanori
Eberl, Leo
Nomura, Nobuhiko
Zacharoff, Lori A
El-Naggar, Mohamed Y
Yalcin, Sibel Ebru
Malvankar, Nikhil S
Rojas-Andrade, Mauricio D
Hochbaum, Allon I
Yan, Jing
Stone, Howard A
Wingreen, Ned S
Bassler, Bonnie L
Wu, Yilin
Xu, Haoran
Drescher, Knut
Dunkel, Jörn
Roadmap on emerging concepts in the physical biology of bacterial biofilms: from surface sensing to community formation
title Roadmap on emerging concepts in the physical biology of bacterial biofilms: from surface sensing to community formation
title_full Roadmap on emerging concepts in the physical biology of bacterial biofilms: from surface sensing to community formation
title_fullStr Roadmap on emerging concepts in the physical biology of bacterial biofilms: from surface sensing to community formation
title_full_unstemmed Roadmap on emerging concepts in the physical biology of bacterial biofilms: from surface sensing to community formation
title_short Roadmap on emerging concepts in the physical biology of bacterial biofilms: from surface sensing to community formation
title_sort roadmap on emerging concepts in the physical biology of bacterial biofilms: from surface sensing to community formation
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8506656/
https://www.ncbi.nlm.nih.gov/pubmed/33462162
http://dx.doi.org/10.1088/1478-3975/abdc0e
work_keys_str_mv AT wonggerardcl roadmaponemergingconceptsinthephysicalbiologyofbacterialbiofilmsfromsurfacesensingtocommunityformation
AT antanijyotd roadmaponemergingconceptsinthephysicalbiologyofbacterialbiofilmsfromsurfacesensingtocommunityformation
AT lelepushkarp roadmaponemergingconceptsinthephysicalbiologyofbacterialbiofilmsfromsurfacesensingtocommunityformation
AT chenjing roadmaponemergingconceptsinthephysicalbiologyofbacterialbiofilmsfromsurfacesensingtocommunityformation
AT nanbeiyan roadmaponemergingconceptsinthephysicalbiologyofbacterialbiofilmsfromsurfacesensingtocommunityformation
AT kuhnmarcoj roadmaponemergingconceptsinthephysicalbiologyofbacterialbiofilmsfromsurfacesensingtocommunityformation
AT persatalexandre roadmaponemergingconceptsinthephysicalbiologyofbacterialbiofilmsfromsurfacesensingtocommunityformation
AT brujeanlouis roadmaponemergingconceptsinthephysicalbiologyofbacterialbiofilmsfromsurfacesensingtocommunityformation
AT høylandkroghsboninamolin roadmaponemergingconceptsinthephysicalbiologyofbacterialbiofilmsfromsurfacesensingtocommunityformation
AT siryapornalbert roadmaponemergingconceptsinthephysicalbiologyofbacterialbiofilmsfromsurfacesensingtocommunityformation
AT conradjacintac roadmaponemergingconceptsinthephysicalbiologyofbacterialbiofilmsfromsurfacesensingtocommunityformation
AT carrarafrancesco roadmaponemergingconceptsinthephysicalbiologyofbacterialbiofilmsfromsurfacesensingtocommunityformation
AT yawatayutaka roadmaponemergingconceptsinthephysicalbiologyofbacterialbiofilmsfromsurfacesensingtocommunityformation
AT stockerroman roadmaponemergingconceptsinthephysicalbiologyofbacterialbiofilmsfromsurfacesensingtocommunityformation
AT brunyvesv roadmaponemergingconceptsinthephysicalbiologyofbacterialbiofilmsfromsurfacesensingtocommunityformation
AT whitfieldgregoryb roadmaponemergingconceptsinthephysicalbiologyofbacterialbiofilmsfromsurfacesensingtocommunityformation
AT leecalvink roadmaponemergingconceptsinthephysicalbiologyofbacterialbiofilmsfromsurfacesensingtocommunityformation
AT deandajaime roadmaponemergingconceptsinthephysicalbiologyofbacterialbiofilmsfromsurfacesensingtocommunityformation
AT schmidtwilliamc roadmaponemergingconceptsinthephysicalbiologyofbacterialbiofilmsfromsurfacesensingtocommunityformation
AT golestanianramin roadmaponemergingconceptsinthephysicalbiologyofbacterialbiofilmsfromsurfacesensingtocommunityformation
AT otoolegeorgea roadmaponemergingconceptsinthephysicalbiologyofbacterialbiofilmsfromsurfacesensingtocommunityformation
AT floydkylea roadmaponemergingconceptsinthephysicalbiologyofbacterialbiofilmsfromsurfacesensingtocommunityformation
AT yildizfitnath roadmaponemergingconceptsinthephysicalbiologyofbacterialbiofilmsfromsurfacesensingtocommunityformation
AT yangshuai roadmaponemergingconceptsinthephysicalbiologyofbacterialbiofilmsfromsurfacesensingtocommunityformation
AT jinfan roadmaponemergingconceptsinthephysicalbiologyofbacterialbiofilmsfromsurfacesensingtocommunityformation
AT toyofukumasanori roadmaponemergingconceptsinthephysicalbiologyofbacterialbiofilmsfromsurfacesensingtocommunityformation
AT eberlleo roadmaponemergingconceptsinthephysicalbiologyofbacterialbiofilmsfromsurfacesensingtocommunityformation
AT nomuranobuhiko roadmaponemergingconceptsinthephysicalbiologyofbacterialbiofilmsfromsurfacesensingtocommunityformation
AT zacharoffloria roadmaponemergingconceptsinthephysicalbiologyofbacterialbiofilmsfromsurfacesensingtocommunityformation
AT elnaggarmohamedy roadmaponemergingconceptsinthephysicalbiologyofbacterialbiofilmsfromsurfacesensingtocommunityformation
AT yalcinsibelebru roadmaponemergingconceptsinthephysicalbiologyofbacterialbiofilmsfromsurfacesensingtocommunityformation
AT malvankarnikhils roadmaponemergingconceptsinthephysicalbiologyofbacterialbiofilmsfromsurfacesensingtocommunityformation
AT rojasandrademauriciod roadmaponemergingconceptsinthephysicalbiologyofbacterialbiofilmsfromsurfacesensingtocommunityformation
AT hochbaumalloni roadmaponemergingconceptsinthephysicalbiologyofbacterialbiofilmsfromsurfacesensingtocommunityformation
AT yanjing roadmaponemergingconceptsinthephysicalbiologyofbacterialbiofilmsfromsurfacesensingtocommunityformation
AT stonehowarda roadmaponemergingconceptsinthephysicalbiologyofbacterialbiofilmsfromsurfacesensingtocommunityformation
AT wingreenneds roadmaponemergingconceptsinthephysicalbiologyofbacterialbiofilmsfromsurfacesensingtocommunityformation
AT basslerbonniel roadmaponemergingconceptsinthephysicalbiologyofbacterialbiofilmsfromsurfacesensingtocommunityformation
AT wuyilin roadmaponemergingconceptsinthephysicalbiologyofbacterialbiofilmsfromsurfacesensingtocommunityformation
AT xuhaoran roadmaponemergingconceptsinthephysicalbiologyofbacterialbiofilmsfromsurfacesensingtocommunityformation
AT drescherknut roadmaponemergingconceptsinthephysicalbiologyofbacterialbiofilmsfromsurfacesensingtocommunityformation
AT dunkeljorn roadmaponemergingconceptsinthephysicalbiologyofbacterialbiofilmsfromsurfacesensingtocommunityformation