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Identification of common microRNA between COPD and non-small cell lung cancer through pathway enrichment analysis

BACKGROUND: Different factors have been introduced which influence the pathogenesis of chronic obstructive pulmonary disease (COPD) and non-small cell lung cancer (NSCLC). COPD as an independent factor is involved in the development of lung cancer. Moreover, there are certain resemblances between NS...

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Autores principales: Fathinavid, Amirhossein, Ghobadi, Mohadeseh Zarei, Najafi, Ali, Masoudi-Nejad, Ali
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8507163/
https://www.ncbi.nlm.nih.gov/pubmed/34635059
http://dx.doi.org/10.1186/s12863-021-00986-z
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author Fathinavid, Amirhossein
Ghobadi, Mohadeseh Zarei
Najafi, Ali
Masoudi-Nejad, Ali
author_facet Fathinavid, Amirhossein
Ghobadi, Mohadeseh Zarei
Najafi, Ali
Masoudi-Nejad, Ali
author_sort Fathinavid, Amirhossein
collection PubMed
description BACKGROUND: Different factors have been introduced which influence the pathogenesis of chronic obstructive pulmonary disease (COPD) and non-small cell lung cancer (NSCLC). COPD as an independent factor is involved in the development of lung cancer. Moreover, there are certain resemblances between NSCLC and COPD, such as growth factors, activation of intracellular pathways, as well as epigenetic factors. One of the best approaches to understand the possible shared pathogenesis routes between COPD and NSCLC is to study the biological pathways that are activated. MicroRNAs (miRNAs) are critical biomolecules that implicate the regulation of several biological and cellular processes. As such, the main goal of this study was to use a systems biology approach to discover common dysregulated miRNAs between COPD and NSCLC, one that targets most genes within common enriched pathways. RESULTS: To reconstruct the miRNA-pathways for each disease, we used the microarray miRNA expression data. Then, we employed “miRNA set enrichment analysis” (MiRSEA) to identify the most significant joint miRNAs between COPD and NSCLC based on the enrichment scores. Overall, our study revealed the involvement of the targets of miRNAs (such as has-miR-15b, hsa-miR-106a, has-miR-17, has-miR-103, and has-miR-107) in the most important common biological pathways. CONCLUSIONS: According to the promising results of the pathway analysis, the identified miRNAs can be utilized as the new potential signatures for therapy through understanding the molecular mechanisms of both diseases. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12863-021-00986-z.
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spelling pubmed-85071632021-10-20 Identification of common microRNA between COPD and non-small cell lung cancer through pathway enrichment analysis Fathinavid, Amirhossein Ghobadi, Mohadeseh Zarei Najafi, Ali Masoudi-Nejad, Ali BMC Genom Data Research BACKGROUND: Different factors have been introduced which influence the pathogenesis of chronic obstructive pulmonary disease (COPD) and non-small cell lung cancer (NSCLC). COPD as an independent factor is involved in the development of lung cancer. Moreover, there are certain resemblances between NSCLC and COPD, such as growth factors, activation of intracellular pathways, as well as epigenetic factors. One of the best approaches to understand the possible shared pathogenesis routes between COPD and NSCLC is to study the biological pathways that are activated. MicroRNAs (miRNAs) are critical biomolecules that implicate the regulation of several biological and cellular processes. As such, the main goal of this study was to use a systems biology approach to discover common dysregulated miRNAs between COPD and NSCLC, one that targets most genes within common enriched pathways. RESULTS: To reconstruct the miRNA-pathways for each disease, we used the microarray miRNA expression data. Then, we employed “miRNA set enrichment analysis” (MiRSEA) to identify the most significant joint miRNAs between COPD and NSCLC based on the enrichment scores. Overall, our study revealed the involvement of the targets of miRNAs (such as has-miR-15b, hsa-miR-106a, has-miR-17, has-miR-103, and has-miR-107) in the most important common biological pathways. CONCLUSIONS: According to the promising results of the pathway analysis, the identified miRNAs can be utilized as the new potential signatures for therapy through understanding the molecular mechanisms of both diseases. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12863-021-00986-z. BioMed Central 2021-10-12 /pmc/articles/PMC8507163/ /pubmed/34635059 http://dx.doi.org/10.1186/s12863-021-00986-z Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Fathinavid, Amirhossein
Ghobadi, Mohadeseh Zarei
Najafi, Ali
Masoudi-Nejad, Ali
Identification of common microRNA between COPD and non-small cell lung cancer through pathway enrichment analysis
title Identification of common microRNA between COPD and non-small cell lung cancer through pathway enrichment analysis
title_full Identification of common microRNA between COPD and non-small cell lung cancer through pathway enrichment analysis
title_fullStr Identification of common microRNA between COPD and non-small cell lung cancer through pathway enrichment analysis
title_full_unstemmed Identification of common microRNA between COPD and non-small cell lung cancer through pathway enrichment analysis
title_short Identification of common microRNA between COPD and non-small cell lung cancer through pathway enrichment analysis
title_sort identification of common microrna between copd and non-small cell lung cancer through pathway enrichment analysis
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8507163/
https://www.ncbi.nlm.nih.gov/pubmed/34635059
http://dx.doi.org/10.1186/s12863-021-00986-z
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