Cargando…

Assessing population-sampling strategies for reducing the COVID-19 incidence()

As long as critical levels of vaccination have not been reached to ensure heard immunity, and new SARS-CoV-2 strains are developing, the only realistic way to reduce the infection speed in a population is to track the infected individuals before they pass on the virus. Testing the population via sam...

Descripción completa

Detalles Bibliográficos
Autores principales: Guzmán-Merino, Miguel, Durán, Christian, Marinescu, Maria-Cristina, Delgado-Sanz, Concepción, Gomez-Barroso, Diana, Carretero, Jesus, Singh, David E.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8507586/
https://www.ncbi.nlm.nih.gov/pubmed/34678482
http://dx.doi.org/10.1016/j.compbiomed.2021.104938
_version_ 1784581890050621440
author Guzmán-Merino, Miguel
Durán, Christian
Marinescu, Maria-Cristina
Delgado-Sanz, Concepción
Gomez-Barroso, Diana
Carretero, Jesus
Singh, David E.
author_facet Guzmán-Merino, Miguel
Durán, Christian
Marinescu, Maria-Cristina
Delgado-Sanz, Concepción
Gomez-Barroso, Diana
Carretero, Jesus
Singh, David E.
author_sort Guzmán-Merino, Miguel
collection PubMed
description As long as critical levels of vaccination have not been reached to ensure heard immunity, and new SARS-CoV-2 strains are developing, the only realistic way to reduce the infection speed in a population is to track the infected individuals before they pass on the virus. Testing the population via sampling has shown good results in slowing the epidemic spread. Sampling can be implemented at different times during the epidemic and may be done either per individual or for combined groups of people at a time. The work we present here makes two main contributions. We first extend and refine our scalable agent-based COVID-19 simulator to incorporate an improved socio-demographic model which considers professions, as well as a more realistic population mixing model based on contact matrices per country. These extensions are necessary to develop and test various sampling strategies in a scenario including the 62 largest cities in Spain; this is our second contribution. As part of the evaluation, we also analyze the impact of different parameters, such as testing frequency, quarantine time, percentage of quarantine breakers, or group testing, on sampling efficacy. Our results show that the most effective strategies are pooling, rapid antigen test campaigns, and requiring negative testing for access to public areas. The effectiveness of all these strategies can be greatly increased by reducing the number of contacts for infected individual.
format Online
Article
Text
id pubmed-8507586
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Elsevier
record_format MEDLINE/PubMed
spelling pubmed-85075862021-10-13 Assessing population-sampling strategies for reducing the COVID-19 incidence() Guzmán-Merino, Miguel Durán, Christian Marinescu, Maria-Cristina Delgado-Sanz, Concepción Gomez-Barroso, Diana Carretero, Jesus Singh, David E. Comput Biol Med Article As long as critical levels of vaccination have not been reached to ensure heard immunity, and new SARS-CoV-2 strains are developing, the only realistic way to reduce the infection speed in a population is to track the infected individuals before they pass on the virus. Testing the population via sampling has shown good results in slowing the epidemic spread. Sampling can be implemented at different times during the epidemic and may be done either per individual or for combined groups of people at a time. The work we present here makes two main contributions. We first extend and refine our scalable agent-based COVID-19 simulator to incorporate an improved socio-demographic model which considers professions, as well as a more realistic population mixing model based on contact matrices per country. These extensions are necessary to develop and test various sampling strategies in a scenario including the 62 largest cities in Spain; this is our second contribution. As part of the evaluation, we also analyze the impact of different parameters, such as testing frequency, quarantine time, percentage of quarantine breakers, or group testing, on sampling efficacy. Our results show that the most effective strategies are pooling, rapid antigen test campaigns, and requiring negative testing for access to public areas. The effectiveness of all these strategies can be greatly increased by reducing the number of contacts for infected individual. Elsevier 2021-12 /pmc/articles/PMC8507586/ /pubmed/34678482 http://dx.doi.org/10.1016/j.compbiomed.2021.104938 Text en © 2021 The Authors https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Article
Guzmán-Merino, Miguel
Durán, Christian
Marinescu, Maria-Cristina
Delgado-Sanz, Concepción
Gomez-Barroso, Diana
Carretero, Jesus
Singh, David E.
Assessing population-sampling strategies for reducing the COVID-19 incidence()
title Assessing population-sampling strategies for reducing the COVID-19 incidence()
title_full Assessing population-sampling strategies for reducing the COVID-19 incidence()
title_fullStr Assessing population-sampling strategies for reducing the COVID-19 incidence()
title_full_unstemmed Assessing population-sampling strategies for reducing the COVID-19 incidence()
title_short Assessing population-sampling strategies for reducing the COVID-19 incidence()
title_sort assessing population-sampling strategies for reducing the covid-19 incidence()
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8507586/
https://www.ncbi.nlm.nih.gov/pubmed/34678482
http://dx.doi.org/10.1016/j.compbiomed.2021.104938
work_keys_str_mv AT guzmanmerinomiguel assessingpopulationsamplingstrategiesforreducingthecovid19incidence
AT duranchristian assessingpopulationsamplingstrategiesforreducingthecovid19incidence
AT marinescumariacristina assessingpopulationsamplingstrategiesforreducingthecovid19incidence
AT delgadosanzconcepcion assessingpopulationsamplingstrategiesforreducingthecovid19incidence
AT gomezbarrosodiana assessingpopulationsamplingstrategiesforreducingthecovid19incidence
AT carreterojesus assessingpopulationsamplingstrategiesforreducingthecovid19incidence
AT singhdavide assessingpopulationsamplingstrategiesforreducingthecovid19incidence