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A Geant4-DNA Evaluation of Radiation-Induced DNA Damage on a Human Fibroblast

SIMPLE SUMMARY: DNA damage caused by ionizing radiation in a human fibroblast cell evaluated by the Geant4-DNA Monte Carlo toolkit is presented. A validation study using a computational geometric human DNA model was then carried out, and the calculated DNA damage as a function of particle type and e...

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Autores principales: Shin, Wook-Geun, Sakata, Dousatsu, Lampe, Nathanael, Belov, Oleg, Tran, Ngoc Hoang, Petrovic, Ivan, Ristic-Fira, Aleksandra, Dordevic, Milos, Bernal, Mario A., Bordage, Marie-Claude, Francis, Ziad, Kyriakou, Ioanna, Perrot, Yann, Sasaki, Takashi, Villagrasa, Carmen, Guatelli, Susanna, Breton, Vincent, Emfietzoglou, Dimitris, Incerti, Sebastien
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8508455/
https://www.ncbi.nlm.nih.gov/pubmed/34638425
http://dx.doi.org/10.3390/cancers13194940
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author Shin, Wook-Geun
Sakata, Dousatsu
Lampe, Nathanael
Belov, Oleg
Tran, Ngoc Hoang
Petrovic, Ivan
Ristic-Fira, Aleksandra
Dordevic, Milos
Bernal, Mario A.
Bordage, Marie-Claude
Francis, Ziad
Kyriakou, Ioanna
Perrot, Yann
Sasaki, Takashi
Villagrasa, Carmen
Guatelli, Susanna
Breton, Vincent
Emfietzoglou, Dimitris
Incerti, Sebastien
author_facet Shin, Wook-Geun
Sakata, Dousatsu
Lampe, Nathanael
Belov, Oleg
Tran, Ngoc Hoang
Petrovic, Ivan
Ristic-Fira, Aleksandra
Dordevic, Milos
Bernal, Mario A.
Bordage, Marie-Claude
Francis, Ziad
Kyriakou, Ioanna
Perrot, Yann
Sasaki, Takashi
Villagrasa, Carmen
Guatelli, Susanna
Breton, Vincent
Emfietzoglou, Dimitris
Incerti, Sebastien
author_sort Shin, Wook-Geun
collection PubMed
description SIMPLE SUMMARY: DNA damage caused by ionizing radiation in a human fibroblast cell evaluated by the Geant4-DNA Monte Carlo toolkit is presented. A validation study using a computational geometric human DNA model was then carried out, and the calculated DNA damage as a function of particle type and energy is presented. The results of this work showed a significant improvement on past work and were consistent with recent radiobiological experimental data, such as damage yields. This work and the developed methodology could impact a broad number of research fields in which the understanding of radiation effects is crucial, such as cancer radiotherapy, space science, and medical physics. ABSTRACT: Accurately modeling the radiobiological mechanisms responsible for the induction of DNA damage remains a major scientific challenge, particularly for understanding the effects of low doses of ionizing radiation on living beings, such as the induction of carcinogenesis. A computational approach based on the Monte Carlo technique to simulate track structures in a biological medium is currently the most reliable method for calculating the early effects induced by ionizing radiation on DNA, the primary cellular target of such effects. The Geant4-DNA Monte Carlo toolkit can simulate not only the physical, but also the physico-chemical and chemical stages of water radiolysis. These stages can be combined with simplified geometric models of biological targets, such as DNA, to assess direct and indirect early DNA damage. In this study, DNA damage induced in a human fibroblast cell was evaluated using Geant4-DNA as a function of incident particle type (gammas, protons, and alphas) and energy. The resulting double-strand break yields as a function of linear energy transfer closely reproduced recent experimental data. Other quantities, such as fragment length distribution, scavengeable damage fraction, and time evolution of damage within an analytical repair model also supported the plausibility of predicting DNA damage using Geant4-DNA.The complete simulation chain application “molecularDNA”, an example for users of Geant4-DNA, will soon be distributed through Geant4.
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spelling pubmed-85084552021-10-13 A Geant4-DNA Evaluation of Radiation-Induced DNA Damage on a Human Fibroblast Shin, Wook-Geun Sakata, Dousatsu Lampe, Nathanael Belov, Oleg Tran, Ngoc Hoang Petrovic, Ivan Ristic-Fira, Aleksandra Dordevic, Milos Bernal, Mario A. Bordage, Marie-Claude Francis, Ziad Kyriakou, Ioanna Perrot, Yann Sasaki, Takashi Villagrasa, Carmen Guatelli, Susanna Breton, Vincent Emfietzoglou, Dimitris Incerti, Sebastien Cancers (Basel) Article SIMPLE SUMMARY: DNA damage caused by ionizing radiation in a human fibroblast cell evaluated by the Geant4-DNA Monte Carlo toolkit is presented. A validation study using a computational geometric human DNA model was then carried out, and the calculated DNA damage as a function of particle type and energy is presented. The results of this work showed a significant improvement on past work and were consistent with recent radiobiological experimental data, such as damage yields. This work and the developed methodology could impact a broad number of research fields in which the understanding of radiation effects is crucial, such as cancer radiotherapy, space science, and medical physics. ABSTRACT: Accurately modeling the radiobiological mechanisms responsible for the induction of DNA damage remains a major scientific challenge, particularly for understanding the effects of low doses of ionizing radiation on living beings, such as the induction of carcinogenesis. A computational approach based on the Monte Carlo technique to simulate track structures in a biological medium is currently the most reliable method for calculating the early effects induced by ionizing radiation on DNA, the primary cellular target of such effects. The Geant4-DNA Monte Carlo toolkit can simulate not only the physical, but also the physico-chemical and chemical stages of water radiolysis. These stages can be combined with simplified geometric models of biological targets, such as DNA, to assess direct and indirect early DNA damage. In this study, DNA damage induced in a human fibroblast cell was evaluated using Geant4-DNA as a function of incident particle type (gammas, protons, and alphas) and energy. The resulting double-strand break yields as a function of linear energy transfer closely reproduced recent experimental data. Other quantities, such as fragment length distribution, scavengeable damage fraction, and time evolution of damage within an analytical repair model also supported the plausibility of predicting DNA damage using Geant4-DNA.The complete simulation chain application “molecularDNA”, an example for users of Geant4-DNA, will soon be distributed through Geant4. MDPI 2021-09-30 /pmc/articles/PMC8508455/ /pubmed/34638425 http://dx.doi.org/10.3390/cancers13194940 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Shin, Wook-Geun
Sakata, Dousatsu
Lampe, Nathanael
Belov, Oleg
Tran, Ngoc Hoang
Petrovic, Ivan
Ristic-Fira, Aleksandra
Dordevic, Milos
Bernal, Mario A.
Bordage, Marie-Claude
Francis, Ziad
Kyriakou, Ioanna
Perrot, Yann
Sasaki, Takashi
Villagrasa, Carmen
Guatelli, Susanna
Breton, Vincent
Emfietzoglou, Dimitris
Incerti, Sebastien
A Geant4-DNA Evaluation of Radiation-Induced DNA Damage on a Human Fibroblast
title A Geant4-DNA Evaluation of Radiation-Induced DNA Damage on a Human Fibroblast
title_full A Geant4-DNA Evaluation of Radiation-Induced DNA Damage on a Human Fibroblast
title_fullStr A Geant4-DNA Evaluation of Radiation-Induced DNA Damage on a Human Fibroblast
title_full_unstemmed A Geant4-DNA Evaluation of Radiation-Induced DNA Damage on a Human Fibroblast
title_short A Geant4-DNA Evaluation of Radiation-Induced DNA Damage on a Human Fibroblast
title_sort geant4-dna evaluation of radiation-induced dna damage on a human fibroblast
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8508455/
https://www.ncbi.nlm.nih.gov/pubmed/34638425
http://dx.doi.org/10.3390/cancers13194940
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