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Mediation model with a categorical exposure and a censored mediator with application to a genetic study
Mediation analysis is a statistical method for evaluating the direct and indirect effects of an exposure on an outcome in the presence of a mediator. Mediation models have been widely used to determine direct and indirect contributions of genetic variants in clinical phenotypes. In genetic studies,...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8509986/ https://www.ncbi.nlm.nih.gov/pubmed/34637449 http://dx.doi.org/10.1371/journal.pone.0257628 |
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author | Wang, Jian Ning, Jing Shete, Sanjay |
author_facet | Wang, Jian Ning, Jing Shete, Sanjay |
author_sort | Wang, Jian |
collection | PubMed |
description | Mediation analysis is a statistical method for evaluating the direct and indirect effects of an exposure on an outcome in the presence of a mediator. Mediation models have been widely used to determine direct and indirect contributions of genetic variants in clinical phenotypes. In genetic studies, the additive genetic model is the most commonly used model because it can detect effects from either recessive or dominant models (or any model in between). However, the existing approaches for mediation model cannot be directly applied when the genetic model is additive (e.g. the most commonly used model for SNPs) or categorical (e.g. polymorphic loci), and thus modification to measures of indirect and direct effects is warranted. In this study, we proposed overall measures of indirect, direct, and total effects for a mediation model with a categorical exposure and a censored mediator, which accounts for the frequency of different values of the categorical exposure. The proposed approach provides the overall contribution of the categorical exposure to the outcome variable. We assessed the empirical performance of the proposed overall measures via simulation studies and applied the measures to evaluate the mediating effect of a women’s age at menopause on the association between genetic variants and type 2 diabetes. |
format | Online Article Text |
id | pubmed-8509986 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-85099862021-10-13 Mediation model with a categorical exposure and a censored mediator with application to a genetic study Wang, Jian Ning, Jing Shete, Sanjay PLoS One Research Article Mediation analysis is a statistical method for evaluating the direct and indirect effects of an exposure on an outcome in the presence of a mediator. Mediation models have been widely used to determine direct and indirect contributions of genetic variants in clinical phenotypes. In genetic studies, the additive genetic model is the most commonly used model because it can detect effects from either recessive or dominant models (or any model in between). However, the existing approaches for mediation model cannot be directly applied when the genetic model is additive (e.g. the most commonly used model for SNPs) or categorical (e.g. polymorphic loci), and thus modification to measures of indirect and direct effects is warranted. In this study, we proposed overall measures of indirect, direct, and total effects for a mediation model with a categorical exposure and a censored mediator, which accounts for the frequency of different values of the categorical exposure. The proposed approach provides the overall contribution of the categorical exposure to the outcome variable. We assessed the empirical performance of the proposed overall measures via simulation studies and applied the measures to evaluate the mediating effect of a women’s age at menopause on the association between genetic variants and type 2 diabetes. Public Library of Science 2021-10-12 /pmc/articles/PMC8509986/ /pubmed/34637449 http://dx.doi.org/10.1371/journal.pone.0257628 Text en © 2021 Wang et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Wang, Jian Ning, Jing Shete, Sanjay Mediation model with a categorical exposure and a censored mediator with application to a genetic study |
title | Mediation model with a categorical exposure and a censored mediator with application to a genetic study |
title_full | Mediation model with a categorical exposure and a censored mediator with application to a genetic study |
title_fullStr | Mediation model with a categorical exposure and a censored mediator with application to a genetic study |
title_full_unstemmed | Mediation model with a categorical exposure and a censored mediator with application to a genetic study |
title_short | Mediation model with a categorical exposure and a censored mediator with application to a genetic study |
title_sort | mediation model with a categorical exposure and a censored mediator with application to a genetic study |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8509986/ https://www.ncbi.nlm.nih.gov/pubmed/34637449 http://dx.doi.org/10.1371/journal.pone.0257628 |
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